ggKbase home page

13_1_40cm_3_scaffold_5294

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5294_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..472
DNA (471bp) protein (157aa)
PA-phosphatase-like phosphoesterase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YF59_9RHIZ
PA-phosphatase-like phosphoesterase {ECO:0000313|EMBL:EHH09630.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesor
phosphoesterase PA-phosphatase-like protein
13_1_40cm_3_scaffold_5294_2
unknown

Not on your lists

572..757
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_3_scaffold_5294_3
unknown

Not on your lists

889..1029
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_3_scaffold_5294_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1195..1608)
DNA (414bp) protein (138aa)
Response regulator receiver domain protein {ECO:0000313|EMBL:CDM64465.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatog
13_1_40cm_3_scaffold_5294_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1625..2602)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6N9_NIAKG
Uncharacterized photosystem II stability/assembly factor-like protein {ECO:0000313|EMBL:CDM66640.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="
hypothetical protein
13_1_40cm_3_scaffold_5294_6
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(2675..3964)
DNA (1290bp) protein (430aa)
Major facilitator superfamily MFS_1 n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QPG0_9CYAN
major facilitator superfamily MFS_1 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
major facilitator superfamily MFS_1
13_1_40cm_3_scaffold_5294_7
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4292..4879
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBM3_RICCO
Uncharacterized protein {ECO:0000313|EMBL:KGQ19307.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdone
hypothetical protein
13_1_40cm_3_scaffold_5294_8
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

4893..5339
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBX3_SINAD
hypothetical protein Tax=RBG_13_OP8X_37_8_curated
hypothetical protein
13_1_40cm_3_scaffold_5294_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(5349..6140)
DNA (792bp) protein (264aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|Rule
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSZ2_9BACT
13_1_40cm_3_scaffold_5294_10

Not on your lists

6259..6579
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Gordonia araii NBRC 100433 RepID=G7H7B4_9ACTO
Marine sediment metagenome DNA, contig: S01H1_L04801 {ECO:0000313|EMBL:GAF71337.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
13_1_40cm_3_scaffold_5294_11
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

6765..7358
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002D69FD9
hypothetical protein Tax=RBG_16_Caldithrix_48_16_curated
type 11 methyltransferase
13_1_40cm_3_scaffold_5294_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7491..7772)
DNA (282bp) protein (94aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrin
Signal transduction histidine kinase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GF32_9CYAN
PAS domain-containing protein
13_1_40cm_3_scaffold_5294_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7979..8353)
DNA (375bp) protein (125aa)
CheY subfamily protein Rre21 n=7 Tax=Bacteria RepID=F7UQI5_SYNYG
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:CDM66616.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" s
slr1982; CheY subfamily protein Rre21
13_1_40cm_3_scaffold_5294_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8532..9176
DNA (645bp) protein (215aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66615.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_5294_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9272..10612
DNA (1341bp) protein (447aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM66614.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomo
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC id=14625783 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_3_scaffold_5294_16
unknown

Not on your lists

10637..11035
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_3_scaffold_5294_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11166..11549)
DNA (384bp) protein (128aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Py
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LE55_SYNFM
putative 6-pyruvoyl tetrahydropterin synthase
13_1_40cm_3_scaffold_5294_18
unknown

Not on your lists

comp(11574..11948)
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_40cm_3_scaffold_5294_19
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11929..12381)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodopirellula baltica WH47 RepID=F2AM77_RHOBT
Uncharacterized protein {ECO:0000313|EMBL:EGF29229.1}; TaxID=991778 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula bal
hypothetical protein
13_1_40cm_3_scaffold_5294_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12618..13739)
DNA (1122bp) protein (374aa)
DNA helicase, Rad3 {ECO:0000313|EMBL:CDM64401.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CDM64401.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinom
Putative ATP-dependent helicase n=1 Tax=mine drainage metagenome RepID=E6QKS5_9ZZZZ
helicase c2
Displaying 20 items

View Taxonomy