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13_1_40cm_3_scaffold_5672

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5672_1
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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comp(3..317)
DNA (315bp) protein (105aa)
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
Dihydroxy-acid dehydratase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QLP7_9CYAN
13_1_40cm_3_scaffold_5672_2
CG_Micra_02, Micraarchaeota, Archaea

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comp(352..1317)
DNA (966bp) protein (322aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=CG_Micra_02
Branched-chain amino acid aminotransferase n=2 Tax=Halarchaeum acidiphilum RepID=U3A6R9_9EURY
branched-chain amino acid aminotransferase
13_1_40cm_3_scaffold_5672_3
Acidiplasma sp. MBA-1, Acidiplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(1362..1736)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000360F29E
Cupin {ECO:0000313|EMBL:KJE49813.1}; TaxID=1293648 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Acidiplasma.;" source="Acidiplasma sp. MBA-1.;"
hypothetical protein
13_1_40cm_3_scaffold_5672_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1871..2830)
DNA (960bp) protein (320aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomerore
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=uncultured bacterium F39-01 RepID=I3VIC0_9BACT rbh
13_1_40cm_3_scaffold_5672_5

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comp(2963..3502)
DNA (540bp) protein (180aa)
Acetolactate synthase 3 regulatory subunit n=1 Tax=uncultured bacterium F39-01 RepID=I3VIB9_9BACT
Acetolactate synthase 3 regulatory subunit {ECO:0000313|EMBL:AFK79125.1}; TaxID=1191434 species="Bacteria; environmental samples.;" source="uncultured bacterium F39-01.;"
acetolactate synthase, small subunit
13_1_40cm_3_scaffold_5672_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3594..5141)
DNA (1548bp) protein (516aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="P
Acetolactate synthase n=1 Tax=uncultured bacterium F39-01 RepID=I3VIB8_9BACT rbh
acetolactate synthase isozyme III, large subunit (IlvI)
13_1_40cm_3_scaffold_5672_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5662..6561
DNA (900bp) protein (300aa)
Transcriptional regulator n=1 Tax=uncultured bacterium F39-01 RepID=I3VIB7_9BACT rbh
Transcriptional regulator {ECO:0000313|EMBL:CDM64079.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LysR family transcriptional regulator
13_1_40cm_3_scaffold_5672_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6687..8348
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036CDEDC
Endopolygalacturonase {ECO:0000313|EMBL:CDM64751.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
exo-poly-alpha-D-galacturonosidase
13_1_40cm_3_scaffold_5672_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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8441..9379
DNA (939bp) protein (313aa)
Cation diffusion facilitator family transporter n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETM2_9BACT
cation diffusion facilitator family transporter; K03295 cation efflux system protein, CDF family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
cation diffusion facilitator family transporter
13_1_40cm_3_scaffold_5672_10
unknown

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9390..9545
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_40cm_3_scaffold_5672_11
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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9584..10207
DNA (624bp) protein (208aa)
hypothetical protein; K07220 hypothetical protein id=12555366 bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein; K07220 hypothetical protein Tax=GWC2_RIF_CHLX_73_18_curated
phosphate transport regulator
13_1_40cm_3_scaffold_5672_12
unknown

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10256..10657
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_3_scaffold_5672_trna_1
unknown

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10789..10862
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_5672_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10895..11341
DNA (447bp) protein (149aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:CDM66616.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" s
Response regulator receiver protein id=1921961 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
transcriptional regulatory protein
13_1_40cm_3_scaffold_5672_14
unknown

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11313..11978
DNA (666bp) protein (222aa)

This feature has no annotations

13_1_40cm_3_scaffold_5672_15
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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12275..12367
DNA (93bp) protein (31aa)
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Displaying 16 items

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