ggKbase home page

13_1_40cm_4_scaffold_3586

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3586_1
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1..759
DNA (759bp) protein (253aa)
TonB-dependent receptor plug n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZG1_TERSS
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADV83241.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATC
13_1_40cm_4_scaffold_3586_2
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

896..2863
DNA (1968bp) protein (656aa)
TonB-dependent receptor n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJQ5_KORVE
TonB-dependent receptor plug Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
TonB-dependent receptor
13_1_40cm_4_scaffold_3586_3
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3075..3902)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DWJ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU83007.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
hypothetical protein
13_1_40cm_4_scaffold_3586_4
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

4370..5617
DNA (1248bp) protein (416aa)
AAA ATPase central domain protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WP06_GEOS8
ATPase with chaperone activity Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
AAA ATPase
13_1_40cm_4_scaffold_3586_5
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(5614..6468)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023L9_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein
13_1_40cm_4_scaffold_3586_6
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(6507..7013)
DNA (507bp) protein (169aa)
putative solute binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
13_1_40cm_4_scaffold_3586_7
unknown

Not on your lists

comp(7010..7243)
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_8
unknown

Not on your lists

7426..8481
DNA (1056bp) protein (352aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_9
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

8447..9151
DNA (705bp) protein (235aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
13_1_40cm_4_scaffold_3586_10
unknown

Not on your lists

comp(9053..9295)
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_11
unknown

Not on your lists

9397..9612
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_12
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

9616..11052
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003717350
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_4_scaffold_3586_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

11079..12056
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02D93_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82409.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_4_scaffold_3586_14
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

12059..12889
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02D98_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82410.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_4_scaffold_3586_15
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

13044..13523
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Dietzia sp. UCD-THP RepID=UPI0003637F3D
TadE family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
13_1_40cm_4_scaffold_3586_16
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13520..14128
DNA (609bp) protein (203aa)
TadE family protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SAZ2_GEOOG
TadE family protein
Uncharacterized protein {ECO:0000313|EMBL:KFF58793.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
13_1_40cm_4_scaffold_3586_17
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

14146..15483
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI000379D45E
putative transmembrane protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein
13_1_40cm_4_scaffold_3586_18
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

15544..17067
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037CBA0C
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein
13_1_40cm_4_scaffold_3586_19
Crocosphaera watsonii, Crocosphaera, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

17110..18174
DNA (1065bp) protein (355aa)
Glycosyltransferase n=1 Tax=Crocosphaera watsonii WH 8502 RepID=T2IE09_CROWT
Glycosyltransferase {ECO:0000313|EMBL:CCQ56886.1}; TaxID=423472 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Crocosphaera.;" source="Crocosphaera watsonii WH 0005.;"
glycosyl transferase family protein
13_1_40cm_4_scaffold_3586_20
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

18219..18893
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002FB3A2D
Uncharacterized protein {ECO:0000313|EMBL:KER09605.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium
type 11 methyltransferase
13_1_40cm_4_scaffold_3586_21

Not on your lists

18951..19805
DNA (855bp) protein (285aa)
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:KKR03762.1}; TaxID=1618962 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_13b.;"
Methyltransferase type 12 id=4185346 bin=GWA2_CPR4_42_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
methyltransferase domain protein
13_1_40cm_4_scaffold_3586_22
unknown

Not on your lists

comp(19802..20083)
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_23
unknown

Not on your lists

20136..20303
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_24
unknown

Not on your lists

20448..20615
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_4_scaffold_3586_25
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20684..21214
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000378730C
peptidase A24A, prepilin type IV
Peptidase A24A, prepilin type IV {ECO:0000313|EMBL:ABE44462.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas
13_1_40cm_4_scaffold_3586_26
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

21242..22069
DNA (828bp) protein (276aa)
SAF domain n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028Y9_SOLUE
SAF domain-containing protein; K02279 pilus assembly protein CpaB Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SAF domain-containing protein
13_1_40cm_4_scaffold_3586_27
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

22090..23523
DNA (1434bp) protein (478aa)
Type II and III secretion system protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01NX0_SOLUE
type II and III secretion system protein; K02280 pilus assembly protein CpaC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
type II and III secretion system protein
13_1_40cm_4_scaffold_3586_28
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23591..24766
DNA (1176bp) protein (392aa)
Flp pilus polar localization response receiver ATPase TadZ, FlhG domain-containing n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A3R3_PELCD
tadZ; Flp pilus polar localization response receiver ATPase TadZ, FlhG domain-containing
Flp pilus polar localization response receiver ATPase TadZ, FlhG domain-containing {ECO:0000313|EMBL:ABA88994.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadale
13_1_40cm_4_scaffold_3586_29
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

24773..26062
DNA (1290bp) protein (430aa)
Type II secretion system protein E n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YZ1_SOLUE
type II/IV secretion system protein; K02283 pilus assembly protein CpaF Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
type II secretion system protein E
13_1_40cm_4_scaffold_3586_30
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

26080..27033
DNA (954bp) protein (318aa)
pilus assembly protein TadB n=1 Tax=Variovorax paradoxus RepID=UPI0003624C9B
type II secretion system F domain-containing protein; K12510 tight adherence protein B Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
type II secretion system protein
Displaying items 1-30 of 35 in total

View Taxonomy