ggKbase home page

13_1_40cm_4_scaffold_508

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_508_1
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..682
DNA (681bp) protein (227aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000255|HAMAP-Rule:MF_00113}; EC=2.4.99.17 {ECO:0000255|HAMAP-Rule:MF_00113};; Queuosine biosynthesis protein QueA {ECO:0000255|HAMAP-Rule:M
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=QUEA_SORC5
queA1; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
13_1_40cm_4_scaffold_508_2
unknown

Not on your lists

comp(811..1143)
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_40cm_4_scaffold_508_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

1636..2352
DNA (717bp) protein (239aa)
Metallophosphoesterase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AH0_SOLUE
metallophosphoesterase Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
metallophosphoesterase
13_1_40cm_4_scaffold_508_4
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

2429..3907
DNA (1479bp) protein (493aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IH89_KORVE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_4_scaffold_508_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4043..4429
DNA (387bp) protein (129aa)
Anti-sigma factor antagonist n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIB5_CHLTF
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
anti-anti-sigma factor
13_1_40cm_4_scaffold_508_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(4589..5236)
DNA (648bp) protein (216aa)
HNH endonuclease n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003803411
HNH endonuclease Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
HNH endonuclease
13_1_40cm_4_scaffold_508_7
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(5258..5635)
DNA (378bp) protein (126aa)
phosphoribosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Competence protein F, putative id=1715229 bin=GWB2_Geobacter-like_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
phosphoribosyltransferase
13_1_40cm_4_scaffold_508_8
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(5583..5996)
DNA (414bp) protein (138aa)
phosphoribosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_40cm_4_scaffold_508_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(6165..6554)
DNA (390bp) protein (130aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
TraR/DksA family transcriptional regulator
13_1_40cm_4_scaffold_508_10
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6635..7459)
DNA (825bp) protein (275aa)
enoyl-CoA hydratase/isomerase; K07537 cyclohexa-1,5-dienecarbonyl-CoA hydratase [EC:4.2.1.100] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Cyclohexa-1,5-diene-1-carbonyl-CoA hydratase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS86_KORVE
enoyl-CoA hydratase
13_1_40cm_4_scaffold_508_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7745..8404
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ34_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF41016.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_4_scaffold_508_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

8691..10451
DNA (1761bp) protein (587aa)
Alpha amylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRJ6_KORVE
alpha amylase
Alpha amylase {ECO:0000313|EMBL:ABF40504.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatil
13_1_40cm_4_scaffold_508_13

Not on your lists

comp(10468..12903)
DNA (2436bp) protein (812aa)
Alpha-glucosidase 2 {ECO:0000313|EMBL:CBI07148.1}; EC=3.2.1.20 {ECO:0000313|EMBL:CBI07148.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainag
alpha-glucosidase 2 (EC:3.2.1.20)
Alpha-glucosidase 2 n=1 Tax=mine drainage metagenome RepID=E6QIT2_9ZZZZ
13_1_40cm_4_scaffold_508_14
unknown

Not on your lists

comp(12992..13537)
DNA (546bp) protein (182aa)

This feature has no annotations

13_1_40cm_4_scaffold_508_15
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13562..15241)
DNA (1680bp) protein (560aa)
WGS project CAIT00000000 data, contig 7 n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GLW9_9BACT
WGS project CAIT00000000 data, contig 7 {ECO:0000313|EMBL:CCH54895.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ
symporter
13_1_40cm_4_scaffold_508_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

15562..16776
DNA (1215bp) protein (405aa)
Amino acid aldolase or racemase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMX9_KORVE
amino acid aldolase-like protein
Amino acid aldolase or racemase-like protein {ECO:0000313|EMBL:ABF41771.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribac
13_1_40cm_4_scaffold_508_17
unknown

Not on your lists

16823..17191
DNA (369bp) protein (123aa)

This feature has no annotations

13_1_40cm_4_scaffold_508_18
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(17251..17868)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037DFAE8
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
type 11 methyltransferase
13_1_40cm_4_scaffold_508_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

18272..19333
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036900A3
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ABJ81511.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter u
13_1_40cm_4_scaffold_508_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(19478..20881)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000367B4B8
beta-lactamase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-lactamase
13_1_40cm_4_scaffold_508_21
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(20983..22629)
DNA (1647bp) protein (549aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ55_CHLTF
Zn finger domain-containing DnaJ-class molecular chaperone
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:AEP12342.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source
13_1_40cm_4_scaffold_508_22
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

23069..23503
DNA (435bp) protein (145aa)
PAS/PAC sensor hybrid histidine kinase id=4060670 bin=GWF2_Lentisphaerae_50_93 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
multi-sensor hybrid histidine kinase Tax=GWF2_Lentisphaerae_50_93_curated
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_508_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23524..24153)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036AC82B
NADPH-dependent FMN reductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADPH-dependent FMN reductase
13_1_40cm_4_scaffold_508_24
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24216..24725)
DNA (510bp) protein (170aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SHC7_9BACL
Glyoxalase {ECO:0000313|EMBL:KIL41648.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_4_scaffold_508_25

Not on your lists

comp(24773..25204)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-P17 RepID=UPI000361B2A3
Marine sediment metagenome DNA, contig: S01H1_S31861 {ECO:0000313|EMBL:GAG31303.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
putative Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
13_1_40cm_4_scaffold_508_26
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

25687..26124
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U0R0_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY88682.1}; TaxID=251229 species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
13_1_40cm_4_scaffold_508_27
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

26206..27201
DNA (996bp) protein (332aa)
Aldo/keto reductase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QNJ6_SPILD
aldo/keto reductase Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
aldo/keto reductase
13_1_40cm_4_scaffold_508_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(27235..27525)
DNA (291bp) protein (97aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG38_CHLTF
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
13_1_40cm_4_scaffold_508_29
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists


comp(27619..29718)
DNA (2100bp) protein (700aa)
phenylalanyl-tRNA synthetase beta subunit; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITS7_KORVE
phenylalanyl-tRNA synthetase subunit beta
13_1_40cm_4_scaffold_508_30
Synechococcus sp. PCC 6312, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(29722..30501)
DNA (780bp) protein (260aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RRD7_SYNP3
methylase
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AFY60505.1}; TaxID=195253 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="S
Displaying items 1-30 of 52 in total

View Taxonomy