ggKbase home page

13_1_40cm_4_scaffold_5955

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5955_1
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

1..927
DNA (927bp) protein (309aa)
KpsF/GutQ family protein; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Sugar isomerase, KpsF/GutQ family n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F7C0_ACIC5
sugar isomerase, KpsF/GutQ family
13_1_40cm_4_scaffold_5955_2
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1001..1558
DNA (558bp) protein (186aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase {ECO:0000313|EMBL:ACO32370.1}; EC=3.1.3.45 {ECO:0000313|EMBL:ACO32370.1};; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidoba
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1C4_ACIC5
13_1_40cm_4_scaffold_5955_3
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1573..2127
DNA (555bp) protein (185aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=521674 species="Bac
Inorganic pyrophosphatase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SVW9_PLAL2
inorganic diphosphatase
13_1_40cm_4_scaffold_5955_4
unknown

Not on your lists

2180..2446
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_5
Trichoplax adhaerens, Trichoplax, Placozoa, Metazoa

Not on your lists

2528..2926
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030E8297
Iodothyronine deiodinase {ECO:0000256|RuleBase:RU000676}; TaxID=10228 species="Eukaryota; Metazoa; Placozoa; Trichoplax.;" source="Trichoplax adhaerens (Trichoplax reptans).;"
deiodinase, iodothyronine, type I
13_1_40cm_4_scaffold_5955_6
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3158..3865
DNA (708bp) protein (236aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Burkholderia terrae BS001 RepID=I5D3C3_9BURK
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EIN02642.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderi
enoyl-CoA hydratase/isomerase
13_1_40cm_4_scaffold_5955_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3927..5216
DNA (1290bp) protein (430aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UM65_METS4
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACA15090.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Me
13_1_40cm_4_scaffold_5955_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

5291..6163
DNA (873bp) protein (291aa)
Creatininase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZR5_TERSS
Creatininase
Creatininase {ECO:0000313|EMBL:AHG92632.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_5955_9
unknown

Not on your lists

comp(6245..6604)
DNA (360bp) protein (120aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_10
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

6850..7692
DNA (843bp) protein (281aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
13_1_40cm_4_scaffold_5955_11
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7912..8922
DNA (1011bp) protein (337aa)
fumarylacetoacetate hydrolase n=1 Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI000369DAC3
FAA hydrolase family protein {ECO:0000313|EMBL:EMF56975.1}; TaxID=1054862 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC
FAA hydrolase family protein
13_1_40cm_4_scaffold_5955_12
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8931..10142
DNA (1212bp) protein (404aa)
carboxyltransferase (EC:2.3.3.13)
Carboxyltransferase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4T8_9ARCH
hypothetical protein Tax=RBG_13_Deltaproteobacteria_52_11b_curated
13_1_40cm_4_scaffold_5955_13
unknown

Not on your lists

comp(10479..10985)
DNA (507bp) protein (169aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(11216..11824)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LED8_CHLTF
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_4_scaffold_5955_15
unknown

Not on your lists

11845..12234
DNA (390bp) protein (130aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13035..13358
DNA (324bp) protein (108aa)
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
13_1_40cm_4_scaffold_5955_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13384..14745
DNA (1362bp) protein (454aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRA8_KORVE
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_5955_18
unknown

Not on your lists

14790..15287
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_19
unknown

Not on your lists

15280..15429
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_20
unknown

Not on your lists

comp(15476..15988)
DNA (513bp) protein (171aa)

This feature has no annotations

13_1_40cm_4_scaffold_5955_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16013..17533
DNA (1521bp) protein (507aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRB0_KORVE
Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABF40590.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Kor
13_1_40cm_4_scaffold_5955_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(17543..18325)
DNA (783bp) protein (261aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteria
Demethylmenaquinone methyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) PF1_KORVE">RepID=Q1IPF1_KORVE
demethylmenaquinone methyltransferase
13_1_40cm_4_scaffold_5955_23
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(18336..18776)
DNA (441bp) protein (147aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=GWF2_Verrucomicrobia_62_7_curated
3-dehydroquinate synthase (EC:4.2.3.4)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003696E80
13_1_40cm_4_scaffold_5955_24
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(18788..19525)
DNA (738bp) protein (246aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=GWF2_Lentisphaerae_49_21_curated
3-dehydroquinate synthase id=4232167 bin=GWF2_Lentisphaerae_49_21 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
aroB; 3-dehydroquinate synthase
13_1_40cm_4_scaffold_5955_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19552..21174
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koriba
L-aspartate oxidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPE9_KORVE
L-aspartate oxidase
13_1_40cm_4_scaffold_5955_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21190..22221)
DNA (1032bp) protein (344aa)
putative aminopeptidase id=14625109 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Predicted aminopeptidase {ECO:0000313|EMBL:CDM65961.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative aminopeptidase
13_1_40cm_4_scaffold_5955_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(22222..23073)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003694B03
Sec-independent protein translocase TatC
Sec-independent protein translocase protein TatC {ECO:0000255|HAMAP-Rule:MF_00902}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source=
13_1_40cm_4_scaffold_5955_28
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23063..23467)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036A6438
Sec-independent protein translocase protein TatB {ECO:0000256|SAAS:SAAS00028234}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfov
sec-independent translocation protein mttA/Hcf106
13_1_40cm_4_scaffold_5955_29
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

23601..25190
DNA (1590bp) protein (530aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
Carboxyl-terminal protease n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN73_KORVE
carboxyl-terminal protease
Displaying 29 items

View Taxonomy