ggKbase home page

13_1_40cm_4_scaffold_888

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_888_1
unknown

Not on your lists

comp(2..493)
DNA (492bp) protein (164aa)

This feature has no annotations

13_1_40cm_4_scaffold_888_2
unknown

Not on your lists

595..1104
DNA (510bp) protein (170aa)

This feature has no annotations

13_1_40cm_4_scaffold_888_3
unknown

Not on your lists

1136..1336
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_888_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

1374..2798
DNA (1425bp) protein (475aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
MiaB family RNA modification protein (EC:1.3.1.74)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3P9_9BACT
13_1_40cm_4_scaffold_888_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2901..3449
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017457FE
Uncharacterized protein {ECO:0000313|EMBL:EDY18905.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_40cm_4_scaffold_888_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3522..4472
DNA (951bp) protein (317aa)
Glycosyl transferase family 9 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYF5_9BACT
Glycosyl transferase family 9 {ECO:0000313|EMBL:EDY20496.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glycosyl transferase family protein
13_1_40cm_4_scaffold_888_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4516..5613)
DNA (1098bp) protein (366aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=320771 species="Bacter
DNA polymerase III subunit beta (EC:2.7.7.7)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI00037FC9A7
13_1_40cm_4_scaffold_888_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5771..7132)
DNA (1362bp) protein (454aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D051_9BACT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin
chromosomal replication initiator protein DnaA
13_1_40cm_4_scaffold_888_9
unknown

Not on your lists

7767..8021
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_888_10
unknown

Not on your lists

8063..8323
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_40cm_4_scaffold_888_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9128..9535)
DNA (408bp) protein (136aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC78_9BACT
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EDY15955.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
exbD; biopolymer transport protein ExbD/TolR
13_1_40cm_4_scaffold_888_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9558..10283)
DNA (726bp) protein (242aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC79_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EDY15956.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
tolQ; MotA/TolQ/ExbB proton channel family protein
13_1_40cm_4_scaffold_888_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10280..11251)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC80_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
hypothetical protein
13_1_40cm_4_scaffold_888_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11487..12491)
DNA (1005bp) protein (335aa)
8-oxoguanine DNA glycosylase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D964_9BACT
8-oxoguanine DNA glycosylase domain protein {ECO:0000313|EMBL:EDY16967.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_40cm_4_scaffold_888_15
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12596..14200
DNA (1605bp) protein (535aa)
SSS sodium solute transporter superfamily n=1 Tax=Akkermansia muciniphila (strain ATCC BAA-835) RepID=B2ULX1_AKKM8
SSS sodium solute transporter superfamily protein
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:CDB55845.1}; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environme
13_1_40cm_4_scaffold_888_16
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

14295..14615
DNA (321bp) protein (107aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=3 Tax=Rhodothermus marinus RepID=D0MG33_RHOM4
fdxA; ferredoxin; K05524 ferredoxin Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
4Fe-4S ferredoxin
13_1_40cm_4_scaffold_888_17
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(14846..16618)
DNA (1773bp) protein (591aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
aspartyl-tRNA synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017468E8
aspartyl-tRNA synthetase
13_1_40cm_4_scaffold_888_18
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists


comp(16705..18015)
DNA (1311bp) protein (437aa)
Histidine--tRNA ligase {ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|SAAS:SAAS00043629};; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales
Histidyl-tRNA synthetase n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DX00_METI4
hisS; Histidyl-tRNA synthetase
13_1_40cm_4_scaffold_888_19
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18125..18541
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU81_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGO33070.1}; TaxID=1536652 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus
13_1_40cm_4_scaffold_888_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(18674..19645)
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF4_9BACT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDY20118.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
galE; UDP-glucose 4-epimerase
13_1_40cm_4_scaffold_888_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(19697..20239)
DNA (543bp) protein (181aa)
3D domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF5_9BACT
3D domain protein {ECO:0000313|EMBL:EDY20119.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3D domain-containing protein
13_1_40cm_4_scaffold_888_22
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(20449..20928)
DNA (480bp) protein (160aa)
Large-conductance mechanosensitive channel n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=MSCL_SYNAS
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RBG_16_Ignavibacteria_35_7_curated
mscL; large-conductance mechanosensitive channel
13_1_40cm_4_scaffold_888_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20925..21467)
DNA (543bp) protein (181aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=497964 species="Bacteria; Verruco
Leucine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T4_9BACT
leucyl-tRNA synthetase
Displaying 23 items

View Taxonomy