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13_1_40cm_4_scaffold_10908

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_10908_1
unknown

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2..106
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_4_scaffold_10908_2
unknown

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591..908
DNA (318bp) protein (106aa)

This feature has no annotations

13_1_40cm_4_scaffold_10908_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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905..1780
DNA (876bp) protein (292aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9) id=12555289 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
folD; FolD bifunctional protein
13_1_40cm_4_scaffold_10908_4
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1777..2490
DNA (714bp) protein (238aa)
dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RBG_16_Deltaproteobacteria_48_10_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=3240848 bin=GWC2_Methylomirabilis_70_16 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_10908_5
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(2567..3292)
DNA (726bp) protein (242aa)
pantothenate synthetase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] id=24413763 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
pantothenate synthetase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
pantothenate synthetase
13_1_40cm_4_scaffold_10908_6
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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comp(3320..4210)
DNA (891bp) protein (297aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=RBG_16_Aminicenantes_66_30_curated
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I1N7_DESAP
13_1_40cm_4_scaffold_10908_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4296..4955)
DNA (660bp) protein (220aa)
Deoxynucleoside kinase family protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI68_9BACT
Deoxynucleoside kinase family protein
Deoxynucleoside kinase family protein {ECO:0000313|EMBL:CBE69361.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera
13_1_40cm_4_scaffold_10908_8
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4983..5474)
DNA (492bp) protein (164aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RBG_13_Deltaproteobacteria_61_14_curated
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVL2_KORVE
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
13_1_40cm_4_scaffold_10908_9
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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5633..6187
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00036251B8
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_40cm_4_scaffold_10908_10
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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6364..8196
DNA (1833bp) protein (611aa)
Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631};; N-a
Bifunctional protein GlmU n=2 Tax=Geobacter metallireducens RepID=GLMU_GEOMG
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_1_40cm_4_scaffold_10908_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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8281..10119
DNA (1839bp) protein (613aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IT00_KORVE
glutamine--fructose-6-phosphate transaminase
13_1_40cm_4_scaffold_10908_12
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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11492..12376
DNA (885bp) protein (295aa)
superfamily I DNA and RNA helicase (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.4.12) id=12554754 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP-dependent DNA helicase PcrA
13_1_40cm_4_scaffold_10908_13
Acinetobacter bouvetii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12614..12859
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Acinetobacter bouvetii DSM 14964 = CIP 107468 RepID=N9DU89_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENV84023.1}; TaxID=1120925 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter bouv
hypothetical protein
13_1_40cm_4_scaffold_10908_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(12883..14562)
DNA (1680bp) protein (560aa)
ABC transporter related protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LXN9_HALO1 id=5223300 bin=16ft_combo_ws3_JS1 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter
13_1_40cm_4_scaffold_10908_15

Not on your lists

comp(14603..14932)
DNA (330bp) protein (110aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIX2_DESK7
Uncharacterized protein {ECO:0000313|EMBL:KKL75021.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_4_scaffold_10908_16
Saccharomonospora halophila, Saccharomonospora, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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15482..15709
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Saccharomonospora halophila RepID=UPI000370835B
13_1_40cm_4_scaffold_10908_17
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15878..16852)
DNA (975bp) protein (325aa)
porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=RBG_13_Deltaproteobacteria_43_22_curated
Delta-aminolevulinic acid dehydratase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIK0_KORVE
delta-aminolevulinic acid dehydratase
13_1_40cm_4_scaffold_10908_18
unknown

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comp(16865..17035)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_10908_trna_1
unknown

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17174..17247
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_10908_19
R_Nitrospirae_40_19, Nitrospirae, Bacteria

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17330..18343
DNA (1014bp) protein (338aa)
tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
tRNA(Ile)-lysidine synthase n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DZR8_9FIRM
tRNA(Ile)-lysidine synthetase
13_1_40cm_4_scaffold_10908_20
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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18375..18749
DNA (375bp) protein (125aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tRNA(Ile)-lysidine synthase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0F4_THEOJ
tRNA(Ile)-lysidine synthetase
13_1_40cm_4_scaffold_10908_21
unknown

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18746..18856
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 22 items

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