ggKbase home page

13_1_40cm_4_scaffold_13955

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13955_1
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

3..563
DNA (561bp) protein (187aa)
Kelch motif protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP4_CHLTF id=5223271 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Kelch motif protein Tax=RBG_13_OP8X_37_8_curated
hypothetical protein
13_1_40cm_4_scaffold_13955_2
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(725..2809)
DNA (2085bp) protein (695aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) id=4764254 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase Tax=GWC2_Nitrospirae_56_14_curated
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
13_1_40cm_4_scaffold_13955_3
unknown

Not on your lists

comp(2868..4043)
DNA (1176bp) protein (392aa)

This feature has no annotations

13_1_40cm_4_scaffold_13955_4
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(4030..4515)
DNA (486bp) protein (162aa)
Tax=RBG_16_Caldithrix_48_16_curated
13_1_40cm_4_scaffold_13955_5
unknown

Not on your lists

comp(4731..4889)
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_13955_6
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(4889..6310)
DNA (1422bp) protein (474aa)
Serine-aspartate repeat-containing protein F n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LLI7_METBM
lipoprotein Tax=RBG_13_OP8X_37_8_curated
hypothetical protein
13_1_40cm_4_scaffold_13955_7
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6453..8006)
DNA (1554bp) protein (518aa)
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
hypothetical protein id=14429297 bin=bin3_NC10 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_13955_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9330..11138
DNA (1809bp) protein (603aa)
Sensor protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMK5_MYXSD
Predicted periplasmic ligand-binding sensor domain {ECO:0000313|EMBL:CDM65942.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methyla
sensor protein
13_1_40cm_4_scaffold_13955_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

11090..12175
DNA (1086bp) protein (362aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3)
GAF sensor signal transduction histidine kinase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQL8_ROSCS
periplasmic sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_1_40cm_4_scaffold_13955_10
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12178..13578
DNA (1401bp) protein (467aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPX2_GEOS8
Fis family two component sigma54 specific transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ADW13989.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacter
13_1_40cm_4_scaffold_13955_11
Methanobacterium sp., Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13625..14608)
DNA (984bp) protein (328aa)
Parallel beta-helix repeat protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2F8_METSW
parallel beta-helix repeat-containing protein
13_1_40cm_4_scaffold_13955_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(14633..15748)
DNA (1116bp) protein (372aa)
hypothetical protein Tax=RBG_13_OP8X_37_8_curated
13_1_40cm_4_scaffold_13955_13
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15774..16919)
DNA (1146bp) protein (382aa)
Parallel beta-helix repeat protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2F8_METSW
Parallel beta-helix repeat protein {ECO:0000313|EMBL:AEG17315.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Me
parallel beta-helix repeat-containing protein
Displaying 13 items

View Taxonomy