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13_1_40cm_4_scaffold_2359

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2359_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..1336)
DNA (1335bp) protein (445aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=12555762 bin=CNBR_ACIDO species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family two component sigma54 specific transcriptional regulator
13_1_40cm_4_scaffold_2359_2
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(1588..2142)
DNA (555bp) protein (185aa)
Tax=RBG_16_Chloroflexi_56_11_curated
13_1_40cm_4_scaffold_2359_3
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(2160..3647)
DNA (1488bp) protein (496aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEY6_CHLTF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEP12519.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (stra
13_1_40cm_4_scaffold_2359_4
unknown

Not on your lists

3767..4207
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_40cm_4_scaffold_2359_5
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(4221..5219)
DNA (999bp) protein (333aa)
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8) Tax=RBG_16_Planctomycetes_59_8_curated
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K4F2_9FIRM
13_1_40cm_4_scaffold_2359_6
unknown

Not on your lists

5719..6216
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_4_scaffold_2359_7
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6265..6834)
DNA (570bp) protein (190aa)
Competence protein F n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89XU7_BRADU
comF; competence protein F
Putative competence protein F {ECO:0000313|EMBL:KGJ64629.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobi
13_1_40cm_4_scaffold_2359_8
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6991..8541)
DNA (1551bp) protein (517aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AV32_PELPD
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
13_1_40cm_4_scaffold_2359_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8559..9941)
DNA (1383bp) protein (461aa)
hypothetical protein id=14626909 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_2359_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9972..10331)
DNA (360bp) protein (120aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJ15_KORVE
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein Tax=RBG_16_Acidobacteria_70_10_curated
TraR/DksA family transcriptional regulator
13_1_40cm_4_scaffold_2359_11
RLO_PLX_64_10, Bacteria

Not on your lists

comp(10372..11328)
DNA (957bp) protein (319aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UAK1_ANASK
Fis family two component sigma-54 specific transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_2359_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11383..11745)
DNA (363bp) protein (121aa)
Ribosomal silencing factor RsfS n=1 Tax=Patulibacter medicamentivorans RepID=H0E8M1_9ACTN
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
iojap family protein
13_1_40cm_4_scaffold_2359_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11762..12823)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003665866
Obg family GTPase CgtA; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
obgE; GTPase ObgE
13_1_40cm_4_scaffold_2359_14
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


comp(12946..13221)
DNA (276bp) protein (92aa)
50S ribosomal protein L27 n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=RL27_ACIC5
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (st
13_1_40cm_4_scaffold_2359_15
Centipeda periodontii, Centipeda, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(13253..13570)
DNA (318bp) protein (106aa)
50S ribosomal protein L21 n=1 Tax=Centipeda periodontii DSM 2778 RepID=F5RMD2_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=888060 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Centipeda.;" so
hypothetical protein
13_1_40cm_4_scaffold_2359_16
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13649..15583
DNA (1935bp) protein (645aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_61_14_curated
hypothetical protein id=24450676 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_2359_17
unknown

Not on your lists

comp(16031..16237)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_2359_18
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

16509..18008
DNA (1500bp) protein (500aa)
Outer membrane efflux protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB96_ANADF
outer membrane efflux protein Tax=RBG_13_OP8X_37_8_curated
outer membrane efflux protein
13_1_40cm_4_scaffold_2359_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18005..19174
DNA (1170bp) protein (390aa)
Efflux pump, RND family, membrane fusion lipoprotein n=2 Tax=Geobacter metallireducens RepID=Q39V42_GEOMG
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA Tax=RBG_16_Deltaproteobacteria_64_85_curated
RND family efflux pump membrane fusion lipoprotein
13_1_40cm_4_scaffold_2359_20
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19171..22320
DNA (3150bp) protein (1050aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=14623092 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=CSP1_8_Deltaproteobacteria
acriflavin resistance protein
13_1_40cm_4_scaffold_2359_21
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(22330..22917)
DNA (588bp) protein (196aa)
Putative GTPase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI80_CHLTF
putative GTPase
Putative GTPase {ECO:0000313|EMBL:AEP11538.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
13_1_40cm_4_scaffold_2359_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22945..23439)
DNA (495bp) protein (165aa)
Roadblock/LC7 family protein Tax=RBG_16_Acidobacteria_70_10_curated
Roadblock/LC7 family protein id=2102904 bin=GWB2_Geobacter-like_52_12 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
roadblock/LC7 family protein
13_1_40cm_4_scaffold_2359_23
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(23576..23986)
DNA (411bp) protein (137aa)
hypothetical protein Tax=RBG_16_Planctomycetes_43_13_curated
Putative uncharacterized protein id=4727864 bin=GWA2_Elusimicrobia_69_24 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_1_40cm_4_scaffold_2359_24
unknown

Not on your lists

comp(24038..24352)
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_4_scaffold_2359_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(24430..25434)
DNA (1005bp) protein (335aa)
arcB; ectoine utilization protein EutC (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036A41CC
eutC; Ectoine utilization protein EutC
13_1_40cm_4_scaffold_2359_26
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

Not on your lists

25603..25995
DNA (393bp) protein (131aa)
putative aminotransferase (EC:2.6.1.-) Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
aminotransferase (EC:2.6.1.-)
hypothetical protein id=8267406 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Displaying 26 items

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