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13_1_40cm_4_scaffold_4345

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4345_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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1..198
DNA (198bp) protein (66aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=12555568 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L24
13_1_40cm_4_scaffold_4345_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


227..814
DNA (588bp) protein (196aa)
50S ribosomal protein L5 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P566_9BACT
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_16_Acidobacteria_70_10_curated
50S ribosomal protein L5
13_1_40cm_4_scaffold_4345_3
R_Elusimicrobia_64_13, Elusimicrobia, Bacteria

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830..1015
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Elusimicrobium minutum (strain Pei191) RepID=RS14Z_ELUMP
30S ribosomal protein S14 ; K02954 small subunit ribosomal protein S14 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_64_13_curated
30S ribosomal protein S14
13_1_40cm_4_scaffold_4345_4
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1039..1431
DNA (393bp) protein (131aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=12555565 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain AT
13_1_40cm_4_scaffold_4345_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1439..1996
DNA (558bp) protein (186aa)
50S ribosomal protein L6 n=1 Tax=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) RepID=RL6_KOCRD
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=GWA2_Rokubacteria_73_35_curated
rplF; 50S ribosomal protein L6
13_1_40cm_4_scaffold_4345_6
Bacillus badius, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1997..2368
DNA (372bp) protein (124aa)
50S ribosomal protein L18 n=1 Tax=Bacillus badius RepID=F5HRM4_BACBA
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1455 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus badius.;"
rplR; 50S ribosomal protein L18
13_1_40cm_4_scaffold_4345_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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2403..2933
DNA (531bp) protein (177aa)
30S ribosomal protein S5 n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI000367A63A
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
rpsE; 30S ribosomal protein S5
13_1_40cm_4_scaffold_4345_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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3046..3333
DNA (288bp) protein (96aa)
50S ribosomal protein L30 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZU2_RHOVT
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
50S ribosomal protein L30
13_1_40cm_4_scaffold_4345_9
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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3538..3765
DNA (228bp) protein (76aa)
50S ribosomal protein L15 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036DF3C3
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=29290 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" so
LSU ribosomal protein L15p (L27Ae)
13_1_40cm_4_scaffold_4345_10
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

Not on your lists

comp(4123..4335)
DNA (213bp) protein (71aa)
hypothetical protein Tax=RBG_13_Aminicenantes_64_14_curated
13_1_40cm_4_scaffold_4345_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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4368..5078
DNA (711bp) protein (237aa)
protein translocase subunit secY/sec61 alpha; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
protein translocase subunit SecY/sec61 alpha; K03076 preprotein translocase subunit SecY id=12555559 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit SecY/sec61 alpha
13_1_40cm_4_scaffold_4345_12
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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5778..6539
DNA (762bp) protein (254aa)
map; methionine aminopeptidase, type I (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=GWC2_Nitrospirae_56_14_curated
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase id=4795535 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
13_1_40cm_4_scaffold_4345_13
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

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6540..6758
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P556_9BACT
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RBG_16_Acidobacteria_64_8_curated
infA; translation initiation factor IF-1
13_1_40cm_4_scaffold_4345_14
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6778..6891
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CE83_DESTA
ribosomal protein L36, bacterial type
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Des
13_1_40cm_4_scaffold_4345_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6905..7294
DNA (390bp) protein (130aa)
30S ribosomal protein S13 n=12 Tax=Thermoanaerobacter RepID=RS13_THEP3
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsM; 30S ribosomal protein S13
13_1_40cm_4_scaffold_4345_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


7310..7861
DNA (552bp) protein (184aa)
30S ribosomal protein S11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFK8_9BACT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source
30S ribosomal protein S11
13_1_40cm_4_scaffold_4345_17
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists


7877..8503
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A994_THEID
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Acidobacteria_68_9_curated
30S ribosomal protein S4
13_1_40cm_4_scaffold_4345_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

8729..9466
DNA (738bp) protein (246aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RPOA_SOLUE
13_1_40cm_4_scaffold_4345_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11473..12051)
DNA (579bp) protein (193aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RIFCSPLOWO2_02_FULL_Rok
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] id=14627219 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
13_1_40cm_4_scaffold_4345_20
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(12048..13049)
DNA (1002bp) protein (334aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RBG_13_Aminicenantes_62_12_curated
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] id=16784011 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
lipid A biosynthesis acyltransferase
13_1_40cm_4_scaffold_4345_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13051..14130)
DNA (1080bp) protein (360aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] id=14627186 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=CSP1_6_Rokubacteria
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130)
13_1_40cm_4_scaffold_4345_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14127..15479)
DNA (1353bp) protein (451aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) id=12555687 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-deoxy-D-manno-octulosonic-acid transferase
13_1_40cm_4_scaffold_4345_23

Not on your lists

15706..16896
DNA (1191bp) protein (397aa)
Sigma 54 response regulatory protein n=1 Tax=uncultured bacterium RepID=K2E5H2_9BACT
Sigma 54 response regulatory protein {ECO:0000313|EMBL:EKE04767.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_4_scaffold_4345_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17050..17265
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Anaeromyxobacter RepID=B4UAX2_ANASK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_40cm_4_scaffold_4345_25
RLO_PLX_64_10, Bacteria

Not on your lists

17267..18283
DNA (1017bp) protein (339aa)
quinolinate synthetase (EC:2.1.1.63); K03517 quinolinate synthase [EC:2.5.1.72] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Quinolinate synthetase A n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IEV9_ANADE
quinolinate synthetase
Displaying 25 items

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