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13_1_40cm_3_scaffold_30001

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_30001_1
unknown

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3..125
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_3_scaffold_30001_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(1027..1554)
DNA (528bp) protein (176aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
hypothetical protein n=1 Tax=Bacillus endophyticus RepID=UPI0002F2BBA5
13_1_40cm_3_scaffold_30001_3
Megasphaera genomosp. type_1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1673..2107)
DNA (435bp) protein (145aa)
50S ribosomal protein L19 n=2 Tax=Megasphaera RepID=D3LVN8_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=699218 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;"
50S ribosomal protein L19
13_1_40cm_3_scaffold_30001_4
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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comp(2120..2794)
DNA (675bp) protein (225aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_16_Chloroflexi_60_22_curated
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG7_9BACT
13_1_40cm_3_scaffold_30001_5
Selenomonas flueggei, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2791..3300)
DNA (510bp) protein (170aa)
Ribosome maturation factor RimM n=2 Tax=Selenomonas RepID=C4V0K2_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=638302 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomon
ribosome maturation protein RimM
13_1_40cm_3_scaffold_30001_6

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comp(3297..3533)
DNA (237bp) protein (79aa)
UPF0109 protein Desru_1800 n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DTK1_DESRL
Uncharacterized protein {ECO:0000313|EMBL:KKN22010.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
13_1_40cm_3_scaffold_30001_7
Leuconostoc carnosum, Leuconostoc, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(3536..3904)
DNA (369bp) protein (123aa)
30S ribosomal protein S16 n=1 Tax=Leuconostoc carnosum (strain JB16) RepID=K0DD03_LEUCJ
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1229758 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Leuconostoc.;" source="Leuconostoc carnosum (strai
13_1_40cm_3_scaffold_30001_8
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(3916..5193)
DNA (1278bp) protein (426aa)
Signal recognition particle protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AC68_CARHZ
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobactera
13_1_40cm_3_scaffold_30001_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5186..5428)
DNA (243bp) protein (81aa)
Sigma-70, region 4 n=2 Tax=Sulfobacillus acidophilus RepID=F8I2I6_SULAT
hypothetical protein
UPF0122 protein TPY_1229 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="
13_1_40cm_3_scaffold_30001_10
unknown

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comp(5589..5849)
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_40cm_3_scaffold_30001_11
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5846..6763)
DNA (918bp) protein (306aa)
Signal recognition particle receptor FtsY n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7IV16_DESMD
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiale
13_1_40cm_3_scaffold_30001_12
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(6747..8276)
DNA (1530bp) protein (510aa)
Chromosome partition protein Smc n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I458_CALAS
smc; chromosome segregation protein SMC
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila
Displaying 12 items

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