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13_1_40cm_scaffold_1376

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1376_1
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..147)
DNA (147bp) protein (49aa)
ABC multidrug efflux pump, inner membrane subunit n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5538
ABC multidrug efflux pump, inner membrane subunit Tax=RBG_13_Deltaproteobacteria_61_14_curated
multidrug ABC transporter permease
13_1_40cm_scaffold_1376_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(140..1078)
DNA (939bp) protein (313aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G391_SORC5 id=5224877 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter ATPase Tax=RBG_16_RIF_WS3X_71_46_curated
ABC transporter ATPase
13_1_40cm_scaffold_1376_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1081..1458)
DNA (378bp) protein (126aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_scaffold_1376_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1468..3030)
DNA (1563bp) protein (521aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4P3_GEMAT
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AHG89637.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_1376_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3051..4262)
DNA (1212bp) protein (404aa)
Multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F8_GEMAT
multidrug resistance protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
multidrug resistance protein
13_1_40cm_scaffold_1376_6
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4259..5974)
DNA (1716bp) protein (572aa)
ABC superfamily ATP binding cassette transporter permease n=1 Tax=Desmospora sp. 8437 RepID=F5SGB0_9BACL
ABC superfamily ATP binding cassette transporter permease {ECO:0000313|EMBL:EGK11082.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" source="
iron ABC transporter permease
13_1_40cm_scaffold_1376_7
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5971..6948)
DNA (978bp) protein (326aa)
ABC transporter related protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BC73_MEISD
ABC transporter-like protein
ABC-type spermidine/putrescine transport systems ATPase component {ECO:0000313|EMBL:AHY46446.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrob
13_1_40cm_scaffold_1376_8
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6945..8096)
DNA (1152bp) protein (384aa)
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein n=1 Tax=Desmospora sp. 8437 RepID=F5SGB3_9BACL
Iron ABC superfamily ATP binding cassette transporter substrate-binding protein {ECO:0000313|EMBL:EGK11085.1}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae;
extracellular solute-binding protein
13_1_40cm_scaffold_1376_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8112..10589)
DNA (2478bp) protein (826aa)
Putative LmbE-like protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVE1_SOLCM id=5224387 bin=16ft_combo_ws3_JS1 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
LmbE family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
LmbE family protein
13_1_40cm_scaffold_1376_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10589..11911)
DNA (1323bp) protein (441aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Amidohydrolase id=4817215 bin=GWC2_Ignavibacteria_56_12 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
amidohydrolase
13_1_40cm_scaffold_1376_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

12009..13889
DNA (1881bp) protein (627aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Acyl-CoA dehydrogenase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNS1_9ACTO id=5225245 bin=16ft_combo_ws3_JS1 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acyl-CoA dehydrogenase
13_1_40cm_scaffold_1376_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13911..14291)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00035DB205
S23 ribosomal protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_1376_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14405..15067)
DNA (663bp) protein (221aa)
Phosphoribosyltransferase n=1 Tax=Saccharopolyspora erythraea D RepID=T2S427_SACER
phosphoribosyl transferase protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_1376_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15206..16495
DNA (1290bp) protein (430aa)
gltA; citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
gltA; citrate synthase (EC:2.3.3.1) id=14430702 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
citrate synthase (EC:2.3.3.1)
13_1_40cm_scaffold_1376_15
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(16604..17824)
DNA (1221bp) protein (407aa)
rhlE; ATP-dependent RNA helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] Tax=RBG_16_Acidobacteria_68_9_curated
ATP-dependent RNA helicase RhlE n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXJ0_JANMA
rhlE; ATP-dependent RNA helicase
13_1_40cm_scaffold_1376_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18284..18481
DNA (198bp) protein (66aa)
30S ribosomal protein S21 n=1 Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SMK5_THEAH
30S ribosomal protein S21 Tax=RBG_16_Gemmatimonadetes_66_8_curated
30S ribosomal protein S21
13_1_40cm_scaffold_1376_17
unknown

Not on your lists

comp(18478..18669)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_scaffold_1376_18
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

comp(18705..19337)
DNA (633bp) protein (211aa)
XRE family transcriptional regulator Tax=RBG_16_Aminicenantes_63_16_curated
Transcriptional regulator, XRE family id=1901860 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
13_1_40cm_scaffold_1376_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19427..20122)
DNA (696bp) protein (232aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAF3_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Surfeit locus 1 family protein
13_1_40cm_scaffold_1376_20
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20119..20367)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030C1AB1
excinuclease ABC subunit C; K07461 putative endonuclease Tax=RBG_16_Anaeromyxobacter_69_14_curated
excinuclease ABC subunit C
13_1_40cm_scaffold_1376_21
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(20382..20810)
DNA (429bp) protein (143aa)
Peroxiredoxin, OsmC subfamily n=2 Tax=Thermus oshimai RepID=K7QTV8_THEOS
peroxiredoxin, OsmC subfamily
Peroxiredoxin, OsmC subfamily {ECO:0000313|EMBL:AFV75481.1}; TaxID=751945 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai JL-2.;"
13_1_40cm_scaffold_1376_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

20934..21413
DNA (480bp) protein (160aa)
Glyoxalase-like domain protein
glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=24418765 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_scaffold_1376_23
unknown

Not on your lists

comp(21767..21895)
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_scaffold_1376_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

22813..23277
DNA (465bp) protein (155aa)
Peptidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0ME75_RHOM4
peptidase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
peptidase
13_1_40cm_scaffold_1376_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23307..24185)
DNA (879bp) protein (293aa)
Lysyl oxidase protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8HJ09_ACACA
Lysyl oxidase
Lysyl oxidase {ECO:0000313|EMBL:AHG92636.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_1376_26
unknown

Not on your lists

comp(24329..24790)
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_scaffold_1376_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24784..26022)
DNA (1239bp) protein (413aa)
Regulator of chromosome condensation, RCC1 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UQE9_ROSS1
regulator of chromosome condensation, RCC1 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
regulator of chromosome condensation, RCC1
13_1_40cm_scaffold_1376_28
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

26174..29515
DNA (3342bp) protein (1114aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH24_RHOM4
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY47809.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
13_1_40cm_scaffold_1376_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29545..30951
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJI9_RHOMR
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG91388.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_1376_30
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(31007..31270)
DNA (264bp) protein (88aa)
NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] Tax=GWC2_Gemmatimonadetes_71_10_curated
NAD(P) transhydrogenase subunit beta id=4381502 bin=GWC2_Ignavibacteria_56_12 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
NAD(P) transhydrogenase subunit beta
Displaying 30 items

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