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13_1_40cm_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_25_1
unknown

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2..604
DNA (603bp) protein (201aa)

This feature has no annotations

13_1_40cm_scaffold_25_2
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(540..1070)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PAI5_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX60096.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
hypothetical protein
13_1_40cm_scaffold_25_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1215..1955
DNA (741bp) protein (247aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABQ2_GEMAT
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:AHG92379.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_25_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1960..3468
DNA (1509bp) protein (503aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABQ3_GEMAT
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_25_5

Not on your lists

3537..3920
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR5_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAY89247.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
13_1_40cm_scaffold_25_6
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3904..4683)
DNA (780bp) protein (260aa)
Dienelactone hydrolase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAS4_ANADF
dienelactone hydrolase
Dienelactone hydrolase {ECO:0000313|EMBL:ABS25820.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" so
13_1_40cm_scaffold_25_7
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(4739..7186)
DNA (2448bp) protein (816aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S788_9CYAN
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:AFY65629.1}; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema
13_1_40cm_scaffold_25_8
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7504..8457
DNA (954bp) protein (318aa)
two component transcriptional regulator, luxr family Tax=GWF2_Bacteroidetes_35_48_curated
13_1_40cm_scaffold_25_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8454..8984
DNA (531bp) protein (177aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88655.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_25_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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8968..10611
DNA (1644bp) protein (548aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A762_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
metal dependent phosphohydrolase
13_1_40cm_scaffold_25_11
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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10672..11583
DNA (912bp) protein (304aa)
Pirin n=3 Tax=Nitratireductor RepID=I5C1Q7_9RHIZ id=5224020 bin=16ft_combo_ws3_JS1 species=unknown genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
pirin; K06911 Tax=GWA2_Ignavibacteria_54_16_curated
putative pirin-like protein
13_1_40cm_scaffold_25_12
CSP1_5_NC10, NC10, Bacteria

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comp(11596..13263)
DNA (1668bp) protein (556aa)
diguanylate cyclase id=14428813 bin=bin3_NC10 species=Nitrosospira sp. APG3 genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
diguanylate cyclase Tax=CSP1_5_NC10
diguanylate cyclase
13_1_40cm_scaffold_25_13
unknown

Not on your lists

13449..13829
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_scaffold_25_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

13826..15337
DNA (1512bp) protein (504aa)
putative serine/threonine protein kinase; K11912 serine/threonine-protein kinase PpkA [EC:2.7.11.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Protein kinase n=2 Tax=Chloroflexus RepID=A9WG03_CHLAA
protein kinase
13_1_40cm_scaffold_25_15
unknown

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15334..16383
DNA (1050bp) protein (350aa)

This feature has no annotations

13_1_40cm_scaffold_25_16
unknown

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16446..16949
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_40cm_scaffold_25_17
unknown

Not on your lists

16976..17656
DNA (681bp) protein (227aa)

This feature has no annotations

13_1_40cm_scaffold_25_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

17738..20473
DNA (2736bp) protein (912aa)
membrane associated hydrolase Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative membrane associated hydrolase
membrane associated hydrolase id=24498641 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_scaffold_25_19
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20690..22585
DNA (1896bp) protein (632aa)
X-Pro dipeptidyl-peptidase domain-containing protein n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QEI7_GLUHA
X-Pro dipeptidyl-peptidase domain-containing protein {ECO:0000313|EMBL:EFG84398.1}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeib
X-Pro dipeptidyl-peptidase
13_1_40cm_scaffold_25_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

22689..23048
DNA (360bp) protein (120aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91743.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_25_21
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

23080..23592
DNA (513bp) protein (171aa)
DNA-binding ferritin-like protein (Oxidative damage protectant) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFW9_SINAD
DNA-binding ferritin-like protein
DNA-binding ferritin-like protein (Oxidative damage protectant) {ECO:0000313|EMBL:AGA28269.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Sing
13_1_40cm_scaffold_25_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23592..23984
DNA (393bp) protein (131aa)
DoxX n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK69_KORVE
DoxX protein
DoxX {ECO:0000313|EMBL:ABF42731.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
13_1_40cm_scaffold_25_23
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(24012..24698)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Micromonospora sp. CNB394 RepID=UPI00035CDD25
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB51773.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woe
13_1_40cm_scaffold_25_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

25055..27928
DNA (2874bp) protein (958aa)
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3Q9_GEMAT
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG88767.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_25_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28068..28862
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PDV0_9CYAN id=5225296 bin=16ft_combo_ws3_JS1 species=Calothrix sp. PCC 7507 genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_scaffold_25_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28859..29110
DNA (252bp) protein (84aa)
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=24490873 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ptsN; PTS family fructose/mannitol (fru) porter component IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RBG_16_RIF_WS3X_71_46_curated
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
13_1_40cm_scaffold_25_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29154..29480
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7V1_GEMAT
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:AHG89792.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_25_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

29529..30323
DNA (795bp) protein (265aa)
putative arsenite S-adenosylmethyltransferase (EC:2.1.1.137)
Methyltransferase type 11 id=4759444 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arsM; arsenite S-adenosylmethyltransferase Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_25_29
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

30395..31657
DNA (1263bp) protein (421aa)
Secretion protein HlyD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHN3_9BACT
RND family efflux pump membrane fusion protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
efflux transporter, RND family, MFP subunit
13_1_40cm_scaffold_25_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

31694..32383
DNA (690bp) protein (230aa)
ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AHG93527.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ABC transporter related, ATP binding protein id=4880418 bin=GWC2_Ignavibacteria_56_12 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Displaying items 1-30 of 73 in total

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