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13_1_40cm_scaffold_264

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_264_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3..1445
DNA (1443bp) protein (481aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA ligase D n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V2_ANADF
DNA ligase D
13_1_40cm_scaffold_264_2
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1433..1930
DNA (498bp) protein (166aa)
DNA ligase D n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8V2_ANADF
DNA ligase D
DNA ligase D {ECO:0000313|EMBL:ABS25148.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anae
13_1_40cm_scaffold_264_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1927..2604
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TZI3_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig162, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51939.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
hypothetical protein
13_1_40cm_scaffold_264_4
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

2653..3066
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJV9_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY36575.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus
13_1_40cm_scaffold_264_5
unknown

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3096..3245
DNA (150bp) protein (50aa)

This feature has no annotations

13_1_40cm_scaffold_264_6
unknown

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3242..3607
DNA (366bp) protein (122aa)

This feature has no annotations

13_1_40cm_scaffold_264_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

3675..4850
DNA (1176bp) protein (392aa)
dinB; DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=GWC2_Gemmatimonadetes_71_10_curated
dinB; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Y5_GEMAT
13_1_40cm_scaffold_264_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4888..5304)
DNA (417bp) protein (139aa)
acT domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ACT domain-containing protein id=4139003 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acT domain-containing protein
13_1_40cm_scaffold_264_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5365..5874)
DNA (510bp) protein (170aa)
putative S1B family peptidase (EC:3.4.21.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative S1B family peptidase (EC:3.4.21.-)
Putative S1B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3U7_GEMAT
13_1_40cm_scaffold_264_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5871..6659)
DNA (789bp) protein (263aa)
putative S1B family peptidase (EC:3.4.21.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XQQ5_9BACT id=5224148 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative S1B family peptidase
13_1_40cm_scaffold_264_11
Gracilimonas tropica, Gracilimonas, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6917..7636
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00036CC1CF
13_1_40cm_scaffold_264_12

Not on your lists

7680..9614
DNA (1935bp) protein (645aa)
glycosyl hydrolase, partial n=1 Tax=Aminicenantes bacterium SCGC AAA252-A02 RepID=UPI0003B50F33
Uncharacterized protein {ECO:0000313|EMBL:KKN41235.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycosyl hydrolase BNR repeat-containing protein
13_1_40cm_scaffold_264_13
unknown

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comp(9546..9803)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_264_14
unknown

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10676..10972
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_40cm_scaffold_264_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10990..11673
DNA (684bp) protein (228aa)
SAM-dependent methlyltransferase n=1 Tax=Rhodococcus opacus RepID=UPI00029CC1A3
Methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:AHG89024.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_264_16
RLO_PLX_64_10, Bacteria

Not on your lists

11831..13357
DNA (1527bp) protein (509aa)
Ammonium transporter n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DJ83_DESVM
ammonium transporter; K03320 ammonium transporter, Amt family Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
ammonium transporter
13_1_40cm_scaffold_264_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13402..13809
DNA (408bp) protein (136aa)
Nitrogen regulatory protein P-II n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGH3_CHLTF
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:AHG93827.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_264_18
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

13857..15017
DNA (1161bp) protein (387aa)
hypothetical protein id=14428767 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
13_1_40cm_scaffold_264_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15035..19570)
DNA (4536bp) protein (1512aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain {ECO:0000313|EMBL:BAH40123.1}; EC=1.4.1.13 {ECO:0000313|EMBL:BAH40123.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
Glutamate synthase [NADPH] large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC96_GEMAT
13_1_40cm_scaffold_264_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19818..20657)
DNA (840bp) protein (280aa)
PEP phosphonomutase-like protein id=14626847 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PEP phosphonomutase-like protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_264_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20753..22954
DNA (2202bp) protein (734aa)
dipeptidyl-peptidase IV (EC:3.4.14.5)
Dipeptidyl-peptidase IV {ECO:0000313|EMBL:AEN73784.1}; EC=3.4.14.5 {ECO:0000313|EMBL:AEN73784.1};; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae se
Dipeptidyl-peptidase IV n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI26_RHOMR
13_1_40cm_scaffold_264_22
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22933..24195
DNA (1263bp) protein (421aa)
Major facilitator superfamily MFS_1 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9R1_ANAD2
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL67449.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyx
13_1_40cm_scaffold_264_23
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24192..25538
DNA (1347bp) protein (449aa)
Acyltransferase domain protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1V1_9DELT
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:KIG17790.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa sali
acyltransferase domain-containing protein
13_1_40cm_scaffold_264_24
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25556..26440)
DNA (885bp) protein (295aa)
Tfp pilus assembly protein PilF n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8K8_HALHC
Tfp pilus assembly protein PilF
Tfp pilus assembly protein PilF {ECO:0000313|EMBL:AGB40699.1}; Flags: Precursor;; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source
13_1_40cm_scaffold_264_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(26608..27978)
DNA (1371bp) protein (457aa)
putative NtrC family two-component response regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_264_26
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27975..29654)
DNA (1680bp) protein (560aa)
Sensor histidine kinase n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D1Y6_MYXXD
Histidine kinase {ECO:0000313|EMBL:AKF82870.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fu
sensor histidine kinase
13_1_40cm_scaffold_264_27
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(29651..30958)
DNA (1308bp) protein (436aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=14632032 bin=bin9_gal15 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
peptide/nickel transport system substrate-binding protein
13_1_40cm_scaffold_264_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(31026..31235)
DNA (210bp) protein (70aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Methylmalonyl-CoA epimerase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIJ8_KORVE
methylmalonyl-CoA epimerase
Displaying 28 items

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