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13_1_40cm_scaffold_1004

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1004_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..656)
DNA (654bp) protein (218aa)
rhomboid family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
rhomboid family protein id=12557265 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rhomboid family protein
13_1_40cm_scaffold_1004_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

771..2696
DNA (1926bp) protein (642aa)
Chaperone protein DnaK n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB12_GEMAT
dnaK; chaperone protein DnaK; K04043 molecular chaperone DnaK Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperone protein dnaK
13_1_40cm_scaffold_1004_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

2734..4308
DNA (1575bp) protein (525aa)
Putative S1 family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB13_GEMAT
putative S1 family peptidase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PDZ/DHR/GLGF domain protein
13_1_40cm_scaffold_1004_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(4401..6554)
DNA (2154bp) protein (718aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035EFF67
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_1004_5
unknown

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comp(6681..7349)
DNA (669bp) protein (223aa)

This feature has no annotations

13_1_40cm_scaffold_1004_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

7438..7941
DNA (504bp) protein (168aa)
hypothetical protein
hypothetical membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
alias=16ft_combo_ws3_scaffold_11273_12 id=14625152 bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_1004_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7982..8854)
DNA (873bp) protein (291aa)
ctaG; putative CtaG protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
hypothetical protein; K02862 putative membrane protein id=14625151 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_1004_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8851..9180)
DNA (330bp) protein (110aa)
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_scaffold_1004_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9241..9825)
DNA (585bp) protein (195aa)
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase subunit III id=4393248 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1004_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9829..11619)
DNA (1791bp) protein (597aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] id=24489206 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
13_1_40cm_scaffold_1004_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11616..11987)
DNA (372bp) protein (124aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
cytochrome c oxidase subunit II
13_1_40cm_scaffold_1004_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12540..15839)
DNA (3300bp) protein (1100aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADR0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89180.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_1004_13
unknown

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comp(15926..16606)
DNA (681bp) protein (227aa)

This feature has no annotations

13_1_40cm_scaffold_1004_14
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16751..17491
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TER9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04938.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
13_1_40cm_scaffold_1004_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17488..17886)
DNA (399bp) protein (133aa)
Putative pilin n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W7_GEMAT
putative pilin Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative pilin
13_1_40cm_scaffold_1004_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(18202..18975)
DNA (774bp) protein (258aa)
Crp/FNR family transcriptional regulator n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJF8_RHOM4
Crp/FNR family transcriptional regulator
Crp/FNR family transcriptional regulator {ECO:0000313|EMBL:ACY48616.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="
Displaying 16 items

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