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13_1_40cm_scaffold_1174

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1174_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..675)
DNA (675bp) protein (225aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
OmpA-related protein id=2982121 bin=GWF2_Ignavibacteria_35_20 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
13_1_40cm_scaffold_1174_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

820..2550
DNA (1731bp) protein (577aa)
DNA polymerase III n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B62325
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
PHP domain-containing protein
13_1_40cm_scaffold_1174_3
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(2525..3118)
DNA (594bp) protein (198aa)
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] Tax=RBG_16_RIF_CHLX_72_14_curated
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7S7_SPHTD
13_1_40cm_scaffold_1174_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(3115..3492)
DNA (378bp) protein (126aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_40cm_scaffold_1174_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(3497..4183)
DNA (687bp) protein (229aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
tRNA (guanine-N(1)-)-methyltransferase
13_1_40cm_scaffold_1174_6
unknown

Not on your lists

comp(4170..4400)
DNA (231bp) protein (77aa)

This feature has no annotations

13_1_40cm_scaffold_1174_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(4439..4696)
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIA7_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsP; 30S ribosomal protein S16
13_1_40cm_scaffold_1174_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(4701..6071)
DNA (1371bp) protein (457aa)
Signal recognition particle protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY3_GEMAT
ffh; signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Signal recognition 54 kDa protein
13_1_40cm_scaffold_1174_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6120..7349)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_1174_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(7346..8524)
DNA (1179bp) protein (393aa)
Chaperone protein ClpB n=1 Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DUW1_SULAA
AAA ATPase central domain protein
AAA ATPase central domain protein {ECO:0000313|EMBL:AHG91368.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_1174_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8529..9314)
DNA (786bp) protein (262aa)
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68
pilD; leader peptidase/N-methyltransferase (EC:2.1.1.- 3.4.23.43)
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY7_GEMAT
13_1_40cm_scaffold_1174_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9304..10110)
DNA (807bp) protein (269aa)
RNA methyltransferase, trmh family n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TEV7_HELMI
rRNA methyltransferase; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA/rRNA methyltransferase (SpoU)
13_1_40cm_scaffold_1174_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

10207..11016
DNA (810bp) protein (270aa)
phosphomethylpyrimidine kinase n=1 Tax=Meiothermus timidus RepID=UPI000377A00C
phosphomethylpyrimidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
phosphomethylpyrimidine kinase
13_1_40cm_scaffold_1174_14
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11676..12386
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3B7F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELZ35110.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
13_1_40cm_scaffold_1174_15
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(12487..15144)
DNA (2658bp) protein (886aa)
membrane associated hydrolase Tax=GWC2_Ignavibacteria_rel_36_12_curated
Putative membrane associated hydrolase id=4183989 bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
membrane associated hydrolase
13_1_40cm_scaffold_1174_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15291..16094)
DNA (804bp) protein (268aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ0_GEMAT
inosine guanosine and xanthosine phosphorylase family
13_1_40cm_scaffold_1174_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(16133..17539)
DNA (1407bp) protein (469aa)
Na+ dependent nucleoside transporter domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VY0_SOLUE
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Na+ dependent nucleoside transporter
13_1_40cm_scaffold_1174_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17539..18780)
DNA (1242bp) protein (414aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Adenosine deaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAZ1_GEMAT
adenosine deaminase
13_1_40cm_scaffold_1174_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18777..20396)
DNA (1620bp) protein (540aa)
cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (EC:3.1.4.16) Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
2',3'-cyclic-nucleotide 2'-phosphodiesterase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] id=24473036 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
5'-Nucleotidase domain-containing protein
13_1_40cm_scaffold_1174_20
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

20450..21343
DNA (894bp) protein (298aa)
Putative hydrolase (Metallo-beta-lactamase superfamily) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN56_SINAD
hydrolase
Putative hydrolase (Metallo-beta-lactamase superfamily) {ECO:0000313|EMBL:AGA30809.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphae
13_1_40cm_scaffold_1174_21
unknown

Not on your lists

21387..21662
DNA (276bp) protein (92aa)

This feature has no annotations

Displaying 21 items

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