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13_1_20cm_4_scaffold_1078_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1078_curated_1
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

Not on your lists

comp(2..400)
DNA (399bp) protein (133aa)
Major Facilitator Superfamily transporter n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MVU2_9EURY
sugar transporter
Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
13_1_20cm_4_scaffold_1078_curated_2
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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530..1510
DNA (981bp) protein (327aa)
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein id=24442405 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide/dipeptide ABC transporter ATPase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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1512..3254
DNA (1743bp) protein (581aa)
ABC transporter, ATP-binding component id=4397732 bin=GWC2_Chloroflexi_73_18 species=Mesorhizobium metallidurans genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
peptide ABC transporter ATPase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_4
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3236..4039
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67TE4_SYMTH
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAD39049.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
13_1_20cm_4_scaffold_1078_curated_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(4040..5467)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Oceanobacillus kimchii RepID=UPI00034814DD
class III aminotransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_6
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

5582..6067
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI00034779D9
type 12 methyltransferase
Tax=RBG_16_Planctomycetes_64_12_curated
13_1_20cm_4_scaffold_1078_curated_7
RBG_16_Euryarchaeota_62_10_curated, Euryarchaeota, Archaea

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comp(6085..6219)
DNA (135bp) protein (45aa)
Tax=RBG_16_Euryarchaeota_62_10_curated
13_1_20cm_4_scaffold_1078_curated_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(6236..7510)
DNA (1275bp) protein (425aa)
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L3Q8_KORCO
glutamate-1-semialdehyde aminotransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_9
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

7650..9335
DNA (1686bp) protein (562aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase id=3778131 bin=GWC2_Methylomirabilis_70_16 species=Thermotoga thermarum genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_10

Not on your lists

9340..9912
DNA (573bp) protein (191aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:EQD74621.1}; EC=1.4.-.- {ECO:0000313|EMBL:EQD74621.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=mine drainage metagenome RepID=T1BP86_9ZZZZ
hypothetical protein
13_1_20cm_4_scaffold_1078_curated_11
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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10033..10989
DNA (957bp) protein (319aa)
Ornithine cyclodeaminase (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12] id=24595020 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ornithine cyclodeaminase (EC:4.3.1.12)
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_20cm_4_scaffold_1078_curated_12
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(11058..11723)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003451AF9
hypothetical protein
Tax=RBG_16_Chloroflexi_54_11_curated
13_1_20cm_4_scaffold_1078_curated_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(11794..11961)
DNA (168bp) protein (56aa)
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1078_curated_14
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

12143..13165
DNA (1023bp) protein (341aa)
adh; NAD-dependent alcohol dehydrogenase (EC:1.1.1.1)
NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:BAA81251.2}; EC=1.1.1.1 {ECO:0000313|EMBL:BAA81251.2};; TaxID=272557 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
NAD-dependent alcohol dehydrogenase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9Y9P9_AERPE
13_1_20cm_4_scaffold_1078_curated_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(13192..13959)
DNA (768bp) protein (256aa)
Isoprenylcysteine carboxyl methyltransferase id=2234639 bin=GWB2_Nitrospirae_rel_47_37 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Isoprenylcysteine carboxyl methyltransferase
Tax=RBG_16_Archaea_50_20_curated
13_1_20cm_4_scaffold_1078_curated_16
unknown

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comp(13982..14281)
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_17
unknown

Not on your lists

comp(14278..15102)
DNA (825bp) protein (275aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_18
unknown

Not on your lists

comp(15107..15289)
DNA (183bp) protein (61aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15295..16104)
DNA (810bp) protein (270aa)
Ammonia monooxygenase subunit A (Fragment) n=1 Tax=uncultured ammonia-oxidizing beta proteobacterium RepID=A3F8K4_9PROT
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
13_1_20cm_4_scaffold_1078_curated_20
unknown

Not on your lists

comp(16115..16630)
DNA (516bp) protein (172aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_21
unknown

Not on your lists

comp(16722..17366)
DNA (645bp) protein (215aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_22
unknown

Not on your lists

17560..18114
DNA (555bp) protein (185aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_23
Aeropyrum pernix, Aeropyrum, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(18111..18875)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=Q9Y9P6_AERPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAA81254.2}; TaxID=272557 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum.;" source="Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC; 100138 / K1).;"
13_1_20cm_4_scaffold_1078_curated_24
Metallosphaera yellowstonensis, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(18902..20026)
DNA (1125bp) protein (375aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C179_9CREN
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:EHP70000.1}; TaxID=671065 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.;" source="Metallosphaera yellowstonensis MK1.;"
amidohydrolase
13_1_20cm_4_scaffold_1078_curated_25
unknown

Not on your lists

20234..21109
DNA (876bp) protein (292aa)

This feature has no annotations

13_1_20cm_4_scaffold_1078_curated_26
unknown

Not on your lists

comp(21020..21793)
DNA (774bp) protein (258aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TK84_9CHLR
PBS lyase
13_1_20cm_4_scaffold_1078_curated_trna_1
unknown

Not on your lists

comp(21170..21242)
DNA (73bp)
transferRNA Val
13_1_20cm_4_scaffold_1078_curated_27
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21803..22324)
DNA (522bp) protein (174aa)
Intracellular protease, PfpI family n=1 Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BUD7_ANAMD
Pfpi family intracellular protease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_1_20cm_4_scaffold_1078_curated_28
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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22438..22773
DNA (336bp) protein (112aa)
Aspartate aminotransferase (Fragment) n=2 Tax=mine drainage metagenome RepID=T0Z6Y0_9ZZZZ
Histidinol-phosphate transaminase
Tax=RBG_16_Euryarchaeota_67_27_curated
Displaying 29 items

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