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13_1_20cm_4_scaffold_1524_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1524_curated_1
unknown

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1..78
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_20cm_4_scaffold_1524_curated_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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157..1233
DNA (1077bp) protein (359aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AV4_SOLUE
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_20cm_4_scaffold_1524_curated_3
unknown

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comp(1289..1486)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_20cm_4_scaffold_1524_curated_4
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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1777..2076
DNA (300bp) protein (100aa)
ArsR family transcriptional regulator n=1 Tax=mine drainage metagenome RepID=T1CSJ3_9ZZZZ
transcriptional regulator
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_1524_curated_5
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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2080..2505
DNA (426bp) protein (142aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_1524_curated_6
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2536..3159)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GDR9_DESGI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
13_1_20cm_4_scaffold_1524_curated_7

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comp(3179..4102)
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=mine drainage metagenome RepID=T1BUI5_9ZZZZ
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49146.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
40-residue YVTN family beta-propeller repeat-containing protein
13_1_20cm_4_scaffold_1524_curated_8
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(4102..4566)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon E-plasma RepID=T0N0J3_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_1524_curated_9
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

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4711..5334
DNA (624bp) protein (208aa)
Transcriptional regulator, PadR-like family n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A5M7_THECD
PadR-like family transcriptional regulator
Tax=CG_Dehalo_02
13_1_20cm_4_scaffold_1524_curated_10
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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5435..6550
DNA (1116bp) protein (372aa)
Transporter, major facilitator family protein n=1 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0U0_9ARCH
Transporter, major facilitator family protein {ECO:0000313|EMBL:EIJ65333.1}; TaxID=859350 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
arabinose efflux permease family protein
13_1_20cm_4_scaffold_1524_curated_trna_1
unknown

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comp(6581..6655)
DNA (75bp)
transferRNA Arg
13_1_20cm_4_scaffold_1524_curated_11

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comp(6769..7620)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos12E2 RepID=Q64EA7_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU82270.1}; TaxID=285364 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos12E2.;"
hypothetical protein
13_1_20cm_4_scaffold_1524_curated_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(7774..8157)
DNA (384bp) protein (128aa)
Glycine cleavage system H protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DUA7_9BACL
glycine cleavage system H protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1524_curated_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(8215..8931)
DNA (717bp) protein (239aa)
Methyltransferase type 11 n=1 Tax=Halobacterium sp. DL1 RepID=G4IF23_9EURY
SAM-dependent methyltransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1524_curated_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(8974..10170)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037CA9D9
nicotinate phosphoribosyltransferase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
13_1_20cm_4_scaffold_1524_curated_15
unknown

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comp(10820..11314)
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_20cm_4_scaffold_1524_curated_16
unknown

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11680..12084
DNA (405bp) protein (135aa)

This feature has no annotations

13_1_20cm_4_scaffold_1524_curated_17
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(12311..12808)
DNA (498bp) protein (166aa)
tRNA (pseudouridine(54)-N(1))-methyltransferase n=2 Tax=Euryarchaeota RepID=M9SJ18_9EURY
protein of unknown function DUF358
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_20cm_4_scaffold_1524_curated_18
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(12957..14039)
DNA (1083bp) protein (361aa)
A/G-specific adenine glycosylase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67NN1_SYMTH
A/G-specific adenine glycosylase
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_20cm_4_scaffold_1524_curated_19
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(14142..14825)
DNA (684bp) protein (228aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=5040692 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
thermostable 8-oxoguanine DNA glycosylase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Displaying 20 items

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