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A1-18-all-fractions_k255_3234569

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_3234569_1
unknown

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1..1566
DNA (1566bp) protein (522aa)

This feature has no annotations

A1-18-all-fractions_k255_3234569_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1614..1922)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2LDF5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFD30137.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
A1-18-all-fractions_k255_3234569_3
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1940..2149)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E023
Uncharacterized protein {ECO:0000313|EMBL:CCW16305.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
A1-18-all-fractions_k255_3234569_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2505..2711)
DNA (207bp) protein (69aa)
cold-shock protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4A6E6
Putative cold shock protein {ECO:0000313|EMBL:GAO39236.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
cold-shock DNA-binding domain-containing protein
A1-18-all-fractions_k255_3234569_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2896..3450)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000363FCA9
Uncharacterized protein {ECO:0000313|EMBL:GAO39565.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
A1-18-all-fractions_k255_3234569_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3498..4916)
DNA (1419bp) protein (473aa)
D-2-hydroxyacid dehydrogenase n=1 Tax=Sphingomonas elodea RepID=UPI0002631E55
2-hydroxyacid dehydrogenase
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:AJP72962.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
A1-18-all-fractions_k255_3234569_7

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4971..5462
DNA (492bp) protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0I1N5_9SPHN
A1-18-all-fractions_k255_3234569_8

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comp(5459..5971)
DNA (513bp) protein (171aa)
Polyketide cyclase/dehydrase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S002_9SPHN
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:AIA12136.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
polyketide cyclase/dehydrase
A1-18-all-fractions_k255_3234569_9

Not on your lists

comp(6007..6660)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Adenylate kinase n=1 Tax=Sphingomonas sp. S17 RepID=F3X0H9_9SPHN
adenylate kinase
A1-18-all-fractions_k255_3234569_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6694..8064)
DNA (1371bp) protein (457aa)
preprotein translocase subunit SecY n=1 Tax=Sphingomonas melonis RepID=UPI000381C760
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
preprotein translocase subunit SecY
A1-18-all-fractions_k255_3234569_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8160..8681)
DNA (522bp) protein (174aa)
50S ribosomal protein L15 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=RL15_SPHWW
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
rplO; 50S ribosomal protein L15
A1-18-all-fractions_k255_3234569_12
Sphingomonas jaspsi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8737..8919)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Sphingomonas jaspsi RepID=I0IW43_9SPHN
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=392409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas jaspsi.;"
rpmD; 50S ribosomal protein L30
A1-18-all-fractions_k255_3234569_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8925..9662)
DNA (738bp) protein (246aa)
30S ribosomal protein S5 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ49_9SPHN
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
A1-18-all-fractions_k255_3234569_14
Sphingomonas jaspsi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9663..10016)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas jaspsi RepID=I0IW42_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=392409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas jaspsi.;"
rplR; 50S ribosomal protein L18
A1-18-all-fractions_k255_3234569_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10019..10555)
DNA (537bp) protein (179aa)
50S ribosomal protein L6 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EC88AD
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
rplF; 50S ribosomal protein L6
A1-18-all-fractions_k255_3234569_16
Sphingomonas jaspsi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10555..10944)
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=1 Tax=Sphingomonas jaspsi RepID=I0IW41_9SPHN
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=392409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas jaspsi.;"
rpsH; 30S ribosomal protein S8
A1-18-all-fractions_k255_3234569_17
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10963..11268)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Sphingomonas RepID=UPI00026305B4
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_3234569_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11306..11476)
DNA (171bp) protein (57aa)
50S ribosomal protein L5 n=1 Tax=Sphingobium baderi LL03 RepID=T0HVC2_9SPHN
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
50S ribosomal protein L5
Displaying 18 items

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