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A1-18-all-fractions_k255_2188398

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_2188398_1
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..393)
DNA (393bp) protein (131aa)
RNA polymerase sigma factor RpoD n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IEP4_XANP2
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
A1-18-all-fractions_k255_2188398_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(505..780)
DNA (276bp) protein (92aa)
Translation initiation factor IF-1 n=3 Tax=Rhodopseudomonas palustris RepID=IF1_RHOPA
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
A1-18-all-fractions_k255_2188398_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(823..2142)
DNA (1320bp) protein (440aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K63_RHOP5
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABJ07671.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
A1-18-all-fractions_k255_2188398_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(2445..2738)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003702B01
extracellular repeat protein, HAF family
Extracellular repeat protein, HAF family {ECO:0000313|EMBL:AHG88154.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
A1-18-all-fractions_k255_2188398_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3017..4348
DNA (1332bp) protein (444aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
adenylosuccinate lyase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000372569F
adenylosuccinate lyase
A1-18-all-fractions_k255_2188398_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4408..5187
DNA (780bp) protein (260aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Glutamate racemase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13A85_RHOPS
A1-18-all-fractions_k255_2188398_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5296..5616
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PK09_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11202.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
A1-18-all-fractions_k255_2188398_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5856..6473
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=2 Tax=Oligotropha carboxidovorans RepID=RS4_OLICO
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
A1-18-all-fractions_k255_2188398_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6556..6894)
DNA (339bp) protein (113aa)
Glutaredoxin n=1 Tax=Rhodovulum sp. PH10 RepID=J5PDT1_9RHOB
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
glutaredoxin-like protein
A1-18-all-fractions_k255_2188398_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7004..7483)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L979_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW10023.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
endoribonuclease L-PSP
A1-18-all-fractions_k255_2188398_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7483..7719)
DNA (237bp) protein (79aa)
ATP-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E4165E
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47563.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
BolA-like protein
A1-18-all-fractions_k255_2188398_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7735..10083)
DNA (2349bp) protein (783aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RPI4_9BRAD
A1-18-all-fractions_k255_2188398_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10080..10781)
DNA (702bp) protein (234aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00038255C2
A1-18-all-fractions_k255_2188398_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10843..11082)
DNA (240bp) protein (80aa)
phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
Bsl5728 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IB1_BRADU
A1-18-all-fractions_k255_2188398_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11196..11993)
DNA (798bp) protein (266aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UDU9_9RHOB
phosphoribosylaminoimidazolesuccinocarboxamide synthase
A1-18-all-fractions_k255_2188398_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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12303..12626
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031452FC
HpcH/HpaI aldolase
HpcH/HpaI aldolase {ECO:0000313|EMBL:ADZ70011.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
A1-18-all-fractions_k255_2188398_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12689..13468
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003716503
Hydroxyacid aldolase {ECO:0000313|EMBL:KFG67667.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
HpcH/HpaI aldolase/citrate lyase family protein
A1-18-all-fractions_k255_2188398_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13653..14855)
DNA (1203bp) protein (401aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Um32 methyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PJW8_9RHOB
RNA methyl transferase TrmH
A1-18-all-fractions_k255_2188398_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15167..16072)
DNA (906bp) protein (302aa)
Methyltransferase FkbM family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07R23_RHOP5
Uncharacterized protein {ECO:0000313|EMBL:ETR75992.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
FkbM family methyltransferase
A1-18-all-fractions_k255_2188398_20
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16447..17430
DNA (984bp) protein (328aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HP02_9BRAD
icdA; isocitrate dehydrogenase
Displaying 20 items

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