ggKbase home page
Advanced Search
Search Help

A2-18-all-fractions_metab_conc_122

wsip-metawrap-drep-bins_Actinobacteria_71_6
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 5.78 Longest contig: 26.11 Kbp Bin length: 6.21 Mbp GC content: 71.43 %
Contigs count: 1413 Features count: 6994 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 43 / 55 MC: 10 BSCG 48 / 51 MC: 13 ASCG 11 / 38 MC: 3
Displaying items 51-100 of 1413 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A2-18-all-fractions_k255_875912
Domain: Bacteria (72.73%)
11 9261 bp 70.88 5.47 85.29
A2-18-all-fractions_k255_2578559
Class: Actinobacteria (63.64%)
11 8140 bp 71.22 4.61 88.23
A2-18-all-fractions_k255_6630006
Species: Kibdelosporangium sp. MJ126-NF4 (54.55%)
11 13465 bp 73.56 6.25 96.92
A2-18-all-fractions_k255_1234283
Class: Actinobacteria (90.91%)
11 10302 bp 71.56 4.98 91.29
A2-18-all-fractions_k255_2827004
Class: Actinobacteria (50%)
10 6570 bp 73.09 4.93 87.85
A2-18-all-fractions_k255_6899655
Class: Actinobacteria (50%)
10 5585 bp 68.74 3.38 76.11
A2-18-all-fractions_k255_1417324
Class: Actinobacteria (60%)
10 10263 bp 73.35 4.84 91.90
A2-18-all-fractions_k255_2976116
Class: Actinobacteria (100%)
10 11543 bp 72.25 5.61 90.86
A2-18-all-fractions_k255_5564894
Species: Ferrimicrobium acidiphilum (60%)
10 9671 bp 67.56 5.26 87.48
A2-18-all-fractions_k255_2992210
Class: Actinobacteria (80%)
10 9260 bp 69.56 5.28 80.64
A2-18-all-fractions_k255_5655111
Genus: Streptomyces (50%)
10 10699 bp 69.74 5.78 93.26
A2-18-all-fractions_k255_95001
Class: Actinobacteria (90%)
10 11140 bp 68.89 5.67 79.58
A2-18-all-fractions_k255_3072313
Class: Actinobacteria (100%)
10 7174 bp 72.30 8.32 95.85
A2-18-all-fractions_k255_4461345
Class: Actinobacteria (60%)
10 10874 bp 70.13 3.88 80.56
A2-18-all-fractions_k255_4478596
Class: Actinobacteria (90%)
10 8688 bp 70.76 5.84 90.44
A2-18-all-fractions_k255_275124
Order: Streptosporangiales (60%)
10 9119 bp 72.98 5.36 83.96
A2-18-all-fractions_k255_4548551
Class: Actinobacteria (80%)
10 8916 bp 66.62 8.34 82.94
A2-18-all-fractions_k255_7475761
Order: Streptosporangiales (50%)
10 6618 bp 71.14 7.25 90.80
A2-18-all-fractions_k255_1920803
Species: Thermomonospora curvata (50%)
10 8414 bp 72.50 5.81 95.34
A2-18-all-fractions_k255_2150641
Class: Actinobacteria (100%)
10 11866 bp 71.73 4.08 88.59
A2-18-all-fractions_k255_648857
Class: Actinobacteria (100%)
10 8153 bp 67.82 16.52 88.53
A2-18-all-fractions_k255_6076691
Order: Streptomycetales (50%)
10 6759 bp 71.18 5.02 86.11
A2-18-all-fractions_k255_6077546
Class: Actinobacteria (90%)
10 7489 bp 71.72 6.05 89.49
A2-18-all-fractions_k255_7730087
Class: Actinobacteria (80%)
10 8413 bp 72.70 6.51 96.03
A2-18-all-fractions_k255_2238709
Class: Actinobacteria (80%)
10 9145 bp 72.60 6.50 90.21
A2-18-all-fractions_k255_3634627
Class: Actinobacteria (70%)
10 8974 bp 70.07 6.75 87.22
A2-18-all-fractions_k255_2270239
Class: Actinobacteria (60%)
10 7291 bp 70.72 5.31 90.23
A2-18-all-fractions_k255_872007
Class: Actinobacteria (70%)
10 8455 bp 70.64 6.67 96.94
A2-18-all-fractions_k255_4919449
Class: Actinobacteria (80%)
10 6223 bp 73.13 3.93 89.04
A2-18-all-fractions_k255_1098297
Class: Actinobacteria (90%)
10 12328 bp 67.96 5.21 79.28
A2-18-all-fractions_k255_2535276
Genus: Streptomyces (60%)
10 7332 bp 67.81 3.62 84.17
A2-18-all-fractions_k255_2549065
Class: Actinobacteria (50%)
10 5128 bp 69.89 6.03 83.66
A2-18-all-fractions_k255_6544427
Class: Actinobacteria (60%)
10 5769 bp 72.14 6.24 80.45
A2-18-all-fractions_k255_2573093
Class: Actinobacteria (60%)
10 9557 bp 73.65 5.67 97.41
A2-18-all-fractions_k255_1222798
Class: Actinobacteria (50%)
10 7599 bp 74.47 4.52 92.26
A2-18-all-fractions_k255_2866037
Class: Actinobacteria (88.89%)
9 8446 bp 72.33 6.00 89.90
A2-18-all-fractions_k255_4192463
Class: Actinobacteria (77.78%)
9 9815 bp 70.56 7.06 93.71
A2-18-all-fractions_k255_5598342
Domain: Bacteria (77.78%)
9 7436 bp 68.25 6.84 84.76
A2-18-all-fractions_k255_7078307
Class: Actinobacteria (55.56%)
9 5339 bp 70.76 4.89 90.02
A2-18-all-fractions_k255_15240
Genus: Streptomyces (77.78%)
9 12098 bp 75.89 3.29 99.88
A2-18-all-fractions_k255_7203779
Class: Actinobacteria (55.56%)
9 4245 bp 69.45 3.22 90.67
A2-18-all-fractions_k255_5686679
Order: Streptosporangiales (77.78%)
9 7508 bp 73.23 7.37 99.53
A2-18-all-fractions_k255_1679605
Class: Actinobacteria (88.89%)
9 6521 bp 73.07 6.21 92.88
A2-18-all-fractions_k255_228209
Class: Actinobacteria (100%)
9 10982 bp 72.65 4.96 92.85
A2-18-all-fractions_k255_3185218
Domain: Bacteria (66.67%)
9 3075 bp 74.15 6.68 87.80
A2-18-all-fractions_k255_1808702
Class: Actinobacteria (66.67%)
9 6924 bp 71.69 4.48 84.88
A2-18-all-fractions_k255_5778605 9 7037 bp 70.48 3.96 90.00
A2-18-all-fractions_k255_319363
Class: Actinobacteria (88.89%)
9 5162 bp 70.59 4.45 78.23
A2-18-all-fractions_k255_3287513
Class: Actinobacteria (77.78%)
9 10659 bp 70.59 7.22 96.54
A2-18-all-fractions_k255_1917341
Class: Actinobacteria (77.78%)
9 7690 bp 72.11 5.42 93.24
Displaying items 51-100 of 1413 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.