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A3-16-all-fractions_k255_1404076

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_1404076_1
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

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1..849
DNA (849bp) protein (283aa)
preprotein translocase subunit SecY n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B548DA
preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
A3-16-all-fractions_k255_1404076_2
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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914..1570
DNA (657bp) protein (219aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
adenylate kinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B74BF4
adenylate kinase
A3-16-all-fractions_k255_1404076_3
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1570..2409
DNA (840bp) protein (280aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
methionine aminopeptidase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B403AB
methionine aminopeptidase
A3-16-all-fractions_k255_1404076_4
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(2533..3348)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S527_GEOOG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB73138.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
A3-16-all-fractions_k255_1404076_5
Dietzia sp. UCD-THP, Dietzia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3712..3933
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B41CBE
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1292020 species="Bacteria; Actinobacteria; Corynebacteriales; Dietziaceae; Dietzia.;" source="Dietzia sp. UCD-THP.;"
Translation initiation factor 1
A3-16-all-fractions_k255_1404076_6
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3962..4075
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=RL36_BEUC1
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
A3-16-all-fractions_k255_1404076_7
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4242..4622
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SH78_GEOOG
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
A3-16-all-fractions_k255_1404076_8
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4622..5026
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B42D34
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
A3-16-all-fractions_k255_1404076_9
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5030..5635
DNA (606bp) protein (202aa)
30S ribosomal protein S4 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B2F1DA
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
A3-16-all-fractions_k255_1404076_10
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5829..6854
DNA (1026bp) protein (342aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3E90B
DNA-directed RNA polymerase subunit alpha
A3-16-all-fractions_k255_1404076_11
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6991..7680
DNA (690bp) protein (230aa)
50S ribosomal protein L17 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3C094
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
A3-16-all-fractions_k255_1404076_12
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7800..8501
DNA (702bp) protein (234aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Frankia sp. QA3 RepID=I9A3W8_9ACTO
A3-16-all-fractions_k255_1404076_13
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8498..9100)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00037583E9
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG77836.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
A3-16-all-fractions_k255_1404076_14
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9173..10066
DNA (894bp) protein (298aa)
Sterol desaturase n=1 Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BJP0_MYCCN
sterol desaturase
Sterol desaturase {ECO:0000313|EMBL:AFM17497.1}; Flags: Precursor;; TaxID=710421 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
A3-16-all-fractions_k255_1404076_15
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10060..10647)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5C436
Uncharacterized protein {ECO:0000313|EMBL:KJK42065.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
hypothetical protein
A3-16-all-fractions_k255_1404076_16
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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comp(10659..11300)
DNA (642bp) protein (214aa)
Putative YhhN family protein n=1 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YYY5_9ACTN
Putative YhhN family protein {ECO:0000313|EMBL:CCM63600.1}; TaxID=1229780 species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
A3-16-all-fractions_k255_1404076_17
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11348..12727)
DNA (1380bp) protein (460aa)
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:ETT24806.1}; EC=1.1.2.4 {ECO:0000313|EMBL:ETT24806.1};; TaxID=1429046 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
Glycolate oxidase, subunit GlcD (glcD) n=1 Tax=Rhodococcus sp. EsD8 RepID=N1MBN1_9NOCA
Glycolate oxidase subunit glcD
A3-16-all-fractions_k255_1404076_18
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12795..14414
DNA (1620bp) protein (540aa)
ABC transporter ATPase (EC:3.6.3.-)
ATPase component of ABC transporters with duplicated ATPase domain {ECO:0000313|EMBL:CCG02093.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCG02093.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
ATPase component of ABC transporters with duplicated ATPase domain n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RW76_BLASD
A3-16-all-fractions_k255_1404076_19
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14433..15158)
DNA (726bp) protein (242aa)
peptidase C60, sortase A and B n=1 Tax=Saccharopolyspora spinosa RepID=UPI00023789F1
peptidase C60, sortase A and B
Peptidase C60, sortase A and B {ECO:0000313|EMBL:ABK51916.1}; Flags: Precursor;; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
A3-16-all-fractions_k255_1404076_20
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15372..15812
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B498DB
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
rplM; 50S ribosomal protein L13
Displaying 20 items

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