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A3-16-all-fractions_k255_5512133

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_5512133_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1570
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00037ACAA3
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:EJL79518.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ribose ABC transporter, ATP-binding protein
A3-16-all-fractions_k255_5512133_2
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1567..2544
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI00037D991A
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:EJE51592.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
inner-membrane translocator
A3-16-all-fractions_k255_5512133_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2541..3638
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI000360A818
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADU39400.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
A3-16-all-fractions_k255_5512133_4
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3635..4552
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036F674E
ribokinase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
A3-16-all-fractions_k255_5512133_5
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

4562..4957
DNA (396bp) protein (132aa)
D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011477}; EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00166232};; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003630369
rbsD; putative high affinity ribose transport protein RbsD
A3-16-all-fractions_k255_5512133_6
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5099..5608
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXQ7_RAMTT
hypothetical protein
Tax=BJP_IG2103_Dechloromonas_63_51
A3-16-all-fractions_k255_5512133_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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6296..7321
DNA (1026bp) protein (342aa)
NMT1/THI5 like domain protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M261_GEODF
NMT1/THI5 like domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
A3-16-all-fractions_k255_5512133_8
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7318..8787
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XE8_RHOFD
periplasmic sensor signal transduction histidine kinase
A3-16-all-fractions_k255_5512133_9
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8753..9196
DNA (444bp) protein (148aa)
Response regulator receiver domain protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XE9_RHOFD
response regulator receiver domain-containing protein
Response regulator receiver domain protein {ECO:0000313|EMBL:ABD69554.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
A3-16-all-fractions_k255_5512133_10
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9193..10785
DNA (1593bp) protein (531aa)
PAS/PAC sensor hybrid histidine kinase id=5080494 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
histidine kinase
Tax=RBG_16_Gallionellales_57_15_curated
A3-16-all-fractions_k255_5512133_11
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10804..11634)
DNA (831bp) protein (277aa)
Putative arginase {ECO:0000313|EMBL:ELX11789.1}; EC=3.5.3.1 {ECO:0000313|EMBL:ELX11789.1};; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
Arginase (EC:3.5.3.1)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003741582
A3-16-all-fractions_k255_5512133_12
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11625..12863)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003460AD6
Uncharacterized protein {ECO:0000313|EMBL:ELX11790.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
hypothetical protein
A3-16-all-fractions_k255_5512133_13
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12877..13545)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000344D77B
Methyltransferase {ECO:0000313|EMBL:ELX11791.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
methyltransferase small
A3-16-all-fractions_k255_5512133_14
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13726..14454)
DNA (729bp) protein (243aa)
Ribitol 2-dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FN7_BRADU
Ribitol 2-dehydrogenase {ECO:0000313|EMBL:BAR54712.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
rdh; ribitol 2-dehydrogenase
A3-16-all-fractions_k255_5512133_15
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14472..15434)
DNA (963bp) protein (321aa)
Transcriptional regulator, AraC family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y124_LEPCP
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACB35441.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-16-all-fractions_k255_5512133_16
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15587..16000)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N474_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EIK96264.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
Bll4598 protein
A3-16-all-fractions_k255_5512133_17
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16044..16400)
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Azotobacter vinelandii RepID=M9YAW6_AZOVI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK21434.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
A3-16-all-fractions_k255_5512133_18
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16404..17648)
DNA (1245bp) protein (415aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037A44CD
transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
A3-16-all-fractions_k255_5512133_19
Bacillus simplex, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17650..18792)
DNA (1143bp) protein (381aa)
membrane protein n=1 Tax=Acidovorax radicis RepID=UPI00023762CB
Alpha/beta hydrolase {ECO:0000313|EMBL:CEG34535.1}; TaxID=1478 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus simplex.;"
alpha/beta hydrolase
A3-16-all-fractions_k255_5512133_20
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18918..19826
DNA (909bp) protein (303aa)
Putative transcriptional regulator, LysR family n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B2AI98_CUPTR
LysR family transcriptional regulator
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CAP63497.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
A3-16-all-fractions_k255_5512133_21
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19840..20436)
DNA (597bp) protein (199aa)
Putative NADPH-quinone reductase n=1 Tax=Desulfovibrio africanus PCS RepID=M5PRU3_DESAF
NAD(P)H dehydrogenase (Quinone) {ECO:0000313|EMBL:EYR67009.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
NAD(P)H dehydrogenase (quinone)
A3-16-all-fractions_k255_5512133_22
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20525..21472)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D5W7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU80019.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
copper resistance D domain-containing protein
A3-16-all-fractions_k255_5512133_23
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21472..21822)
DNA (351bp) protein (117aa)
Cu resistance protein CopC n=1 Tax=Burkholderia terrae BS001 RepID=I5CK04_9BURK
Copper resistance protein {ECO:0000313|EMBL:KFC63476.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
copC domain protein
A3-16-all-fractions_k255_5512133_24
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21904..22362)
DNA (459bp) protein (153aa)
Transcriptional regulator, MerR family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGB2_METPP
Copper export regulator {ECO:0000313|EMBL:EWS55813.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
copG; MerR family transcriptional regulator
A3-16-all-fractions_k255_5512133_25
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22476..22769
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00037A15DA
Copper ion binding protein {ECO:0000313|EMBL:EWS62070.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
heavy metal transport/detoxification protein
A3-16-all-fractions_k255_5512133_26
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22830..25046
DNA (2217bp) protein (739aa)
Silver exporting P-type ATPase {ECO:0000313|EMBL:EWS55971.1}; EC=3.6.3.53 {ECO:0000313|EMBL:EWS55971.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
Copper-transporting P-type ATPase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00035E502E
heavy metal translocating p-type ATPase
A3-16-all-fractions_k255_5512133_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25695..26027
DNA (333bp) protein (111aa)
Integrase n=1 Tax=Vibrio cholerae O1 str. 87395 RepID=M7FUA1_VIBCL
Phage integrase {ECO:0000313|EMBL:CDQ09361.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying 27 items

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