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A3-16-all-fractions_k255_6437698

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_6437698_1
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1452
DNA (1452bp) protein (484aa)
Diguanylate cyclase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1A9_NITHN
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADE16461.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
A3-16-all-fractions_k255_6437698_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1455..3398)
DNA (1944bp) protein (648aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037836CE
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHL23060.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
methyl-accepting chemotaxis sensory transducer
A3-16-all-fractions_k255_6437698_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3619..4548
DNA (930bp) protein (310aa)
Porin Gram-negative type n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y6J5_LEPCP
porin
Porin Gram-negative type {ECO:0000313|EMBL:ACB34831.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-16-all-fractions_k255_6437698_4
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4623..5846)
DNA (1224bp) protein (408aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
histidine kinase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00035EF70F
histidine kinase
A3-16-all-fractions_k255_6437698_5

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comp(5879..6670)
DNA (792bp) protein (264aa)
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) {ECO:0000313|EMBL:CBH97378.1}; EC=5.3.1.1 {ECO:0000313|EMBL:CBH97378.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) n=1 Tax=mine drainage metagenome RepID=E6PR23_9ZZZZ
triosephosphate isomerase
A3-16-all-fractions_k255_6437698_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6667..7815)
DNA (1149bp) protein (383aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM7_POLSJ
extracellular ligand-binding receptor
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABE42665.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7822..8805)
DNA (984bp) protein (328aa)
dihydroxyacetone kinase subunit DhaK (EC:2.7.1.29)
Dihydroxyacetone kinase DhaK subunit {ECO:0000313|EMBL:ABE42664.1}; EC=2.7.1.121 {ECO:0000313|EMBL:ABE42664.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Dihydroxyacetone kinase DhaK subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM8_POLSJ
A3-16-all-fractions_k255_6437698_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8802..9440)
DNA (639bp) protein (213aa)
Dihydroxyacetone kinase DhaL subunit {ECO:0000313|EMBL:ABE42663.1}; EC=2.7.1.121 {ECO:0000313|EMBL:ABE42663.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Dihydroxyacetone kinase DhaL subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM9_POLSJ
dihydroxyacetone kinase subunit L
A3-16-all-fractions_k255_6437698_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9451..10461)
DNA (1011bp) protein (337aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN0_POLSJ
ABC transporter-like protein
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ABE42662.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_10
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10454..11560)
DNA (1107bp) protein (369aa)
Carbohydrate ABC transporter ATP-binding protein, CUT1 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN1_POLSJ
ABC transporter-like protein
Carbohydrate ABC transporter ATP-binding protein, CUT1 family {ECO:0000313|EMBL:ABE42661.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_11
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11563..11730)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN2_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE42660.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11727..12674)
DNA (948bp) protein (316aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN3_POLSJ
binding-protein-dependent transport system inner membrane protein
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:ABE42659.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_13
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12671..13573)
DNA (903bp) protein (301aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN4_POLSJ
binding-protein-dependent transport system inner membrane protein
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:ABE42658.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13708..15042)
DNA (1335bp) protein (445aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN5_POLSJ
extracellular solute-binding protein
Carbohydrate ABC transporter substrate-binding protein, CUT1 family {ECO:0000313|EMBL:ABE42657.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_15
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15205..16239
DNA (1035bp) protein (345aa)
Transcriptional regulator, LacI family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FN6_POLSJ
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABE42656.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
A3-16-all-fractions_k255_6437698_16
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16289..17272
DNA (984bp) protein (328aa)
dihydroxyacetone kinase subunit DhaK (EC:2.7.1.29)
Dihydroxyacetone kinase DhaK subunit {ECO:0000313|EMBL:ABE42664.1}; EC=2.7.1.121 {ECO:0000313|EMBL:ABE42664.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
Dihydroxyacetone kinase DhaK subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM8_POLSJ
A3-16-all-fractions_k255_6437698_17
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17698..18609
DNA (912bp) protein (304aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XYU1_LEPCP
Type II traffic warden ATPase {ECO:0000313|EMBL:EWS56660.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
type IV-A pilus assembly ATPase PilB
Displaying 17 items

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