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A3-16-all-fractions_k255_2870342

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_2870342_1
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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2..382
DNA (381bp) protein (127aa)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit id=2705362 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha
Tax=GWB1_Bdellovibrionales_55_8_curated
A3-16-all-fractions_k255_2870342_2
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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392..973
DNA (582bp) protein (194aa)
fumA; Fumarate hydratase class I, aerobic (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit id=2705360 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWB1_Bdellovibrionales_55_8_curated
A3-16-all-fractions_k255_2870342_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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991..1854
DNA (864bp) protein (288aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
tryptophan 2,3-dioxygenase (EC:1.13.11.11)
Putative tryptophan 2,3-dioxygenase n=1 Tax=mine drainage metagenome RepID=E6PIA2_9ZZZZ
A3-16-all-fractions_k255_2870342_4
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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1861..2427
DNA (567bp) protein (189aa)
Peptide deformylase id=4691433 bin=GWA2__Bacteriovorax-rel_49_15 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
def; peptide deformylase
Tax=GWA2_Bdellovibrionales_49_15_curated
A3-16-all-fractions_k255_2870342_5
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(2453..3037)
DNA (585bp) protein (195aa)
Putative uncharacterized protein id=2683644 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB1_Bdellovibrionales_55_8_curated
A3-16-all-fractions_k255_2870342_6
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(3192..3698)
DNA (507bp) protein (169aa)
Thioesterase superfamily protein id=2953105 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Acyl-CoA thioester hydrolase
Tax=GWB1_Bdellovibrionales_55_8_curated
A3-16-all-fractions_k255_2870342_7
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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3737..4732
DNA (996bp) protein (332aa)
Putative uncharacterized protein id=2953100 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Clostridium kluyveri genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
cysteine transporter
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
A3-16-all-fractions_k255_2870342_8
unknown

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4843..5133
DNA (291bp) protein (97aa)

This feature has no annotations

A3-16-all-fractions_k255_2870342_9
unknown

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5351..5509
DNA (159bp) protein (53aa)

This feature has no annotations

A3-16-all-fractions_k255_2870342_10
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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5561..6253
DNA (693bp) protein (231aa)
ATP-dependent Clp protease proteolytic subunit id=3536915 bin=GWA1_Deltaproteobacteria_52_35 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
clpP; ATP-dependent Clp protease proteolytic subunit
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A3-16-all-fractions_k255_2870342_11
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

6323..7633
DNA (1311bp) protein (437aa)
ATP-dependent Clp protease ATP-binding subunit ClpX id=2952991 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
ATP-dependent protease
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A3-16-all-fractions_k255_2870342_12
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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7883..9721
DNA (1839bp) protein (613aa)
Lon protease id=2952986 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
ATP-dependent protease LA
Tax=GWB1_Bdellovibrionales_55_8_curated
A3-16-all-fractions_k255_2870342_13
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

9743..10474
DNA (732bp) protein (244aa)
ATP-dependent protease La (EC:3.4.21.53)
Lon protease id=2952986 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
Displaying 13 items

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