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A3-18-all-fractions_k255_1127250

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-18-all-fractions_k255_1127250_1

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3..494
-----------------
DNA (492bp)
protein (164aa)
FMN-binding protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348B74F
FMN-binding domain protein {ECO:0000313|EMBL:AIA12668.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
FMN-binding domain protein
A3-18-all-fractions_k255_1127250_2

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491..1219
-----------------
DNA (729bp)
protein (243aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348564E
ApbE family {ECO:0000313|EMBL:AIA12667.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ApbE family lipoprotein
A3-18-all-fractions_k255_1127250_3
unknown

Not on your lists

1229..1687
-----------------
DNA (459bp)
protein (153aa)
membrane protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B75DC
hypothetical protein
A3-18-all-fractions_k255_1127250_4
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1794..2036
-----------------
DNA (243bp)
protein (81aa)
FeoA n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223M8_RHOFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
A3-18-all-fractions_k255_1127250_5
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2044..3945
-----------------
DNA (1902bp)
protein (634aa)
Ferrous iron transport protein B n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q223M7_RHOFD
ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:ABD67826.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
A3-18-all-fractions_k255_1127250_6
unknown

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3947..4210
-----------------
DNA (264bp)
protein (88aa)
hypothetical protein
A3-18-all-fractions_k255_1127250_7
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4212..5156)
-----------------
DNA (945bp)
protein (315aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=ISPH_METPP
A3-18-all-fractions_k255_1127250_8
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5156..5599)
-----------------
DNA (444bp)
protein (148aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0I8_LEPCP
FKBP-type peptidylprolyl isomerase
A3-18-all-fractions_k255_1127250_9
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5670..6344
-----------------
DNA (675bp)
protein (225aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000382580C
radC; DNA repair protein RadC
UPF0758 protein Lcho_0695; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-18-all-fractions_k255_1127250_10
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6341..7003
-----------------
DNA (663bp)
protein (221aa)
Putative DNA endonuclease SmrA {ECO:0000313|EMBL:EWS61719.1}; EC=3.1.-.- {ECO:0000313|EMBL:EWS61719.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003793C85
hypothetical protein
A3-18-all-fractions_k255_1127250_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6978..9254)
-----------------
DNA (2277bp)
protein (759aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
multi-sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4C22
hypothetical protein
A3-18-all-fractions_k255_1127250_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9482..10717
-----------------
DNA (1236bp)
protein (412aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
dinP; DNA-directed DNA polymerase DinP (EC:2.7.7.7)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037C08B7
A3-18-all-fractions_k255_1127250_13
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10674..11747
-----------------
DNA (1074bp)
protein (358aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF56_METPP
Uncharacterized protein {ECO:0000313|EMBL:EWS56451.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
hypothetical protein
A3-18-all-fractions_k255_1127250_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11761..12183
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003722D8D
globin
Globin-like protein {ECO:0000313|EMBL:AEG93996.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
A3-18-all-fractions_k255_1127250_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12191..12886
-----------------
DNA (696bp)
protein (232aa)
hypothetical protein id=5082429 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
A3-18-all-fractions_k255_1127250_16
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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12939..14090
-----------------
DNA (1152bp)
protein (384aa)
lldA; L-lactate dehydrogenase (EC:1.1.2.3)
L-lactate dehydrogenase n=1 Tax=Caldimonas manganoxidans RepID=UPI000373183F
Tax=BJP_IG2103_Rhodocyclales_63_50
A3-18-all-fractions_k255_1127250_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14095..14997)
-----------------
DNA (903bp)
protein (301aa)
LysR family transcriptional regulator n=2 Tax=Acidovorax RepID=K0IDH8_9BURK
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AFU47391.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
A3-18-all-fractions_k255_1127250_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15098..15739
-----------------
DNA (642bp)
protein (214aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7L3_ACIDE
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EER59544.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
NAD-dependent epimerase/dehydratase
A3-18-all-fractions_k255_1127250_19
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15816..16079
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UFD3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE54872.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
A3-18-all-fractions_k255_1127250_20
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16069..16467)
-----------------
DNA (399bp)
protein (133aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWK2_LEPCP
Uncharacterized protein {ECO:0000313|EMBL:KGM39196.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
A3-18-all-fractions_k255_1127250_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16488..17357)
-----------------
DNA (870bp)
protein (290aa)
Putative metalloprotease n=1 Tax=Polaromonas sp. CF318 RepID=J3D7L2_9BURK
Putative metalloprotease {ECO:0000313|EMBL:EJL86354.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
A3-18-all-fractions_k255_1127250_22

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comp(17447..18016)
-----------------
DNA (570bp)
protein (190aa)
Deoxycytidine triphosphate deaminase (DCTP deaminase) {ECO:0000313|EMBL:CBH99012.1}; EC=3.5.4.13 {ECO:0000313|EMBL:CBH99012.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
dcd; deoxycytidine triphosphate deaminase Dcd (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase (DCTP deaminase) n=1 Tax=mine drainage metagenome RepID=E6PVQ5_9ZZZZ
A3-18-all-fractions_k255_1127250_23
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18124..18648
-----------------
DNA (525bp)
protein (175aa)
Putative membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJI6_9BURK
Putative membrane protein {ECO:0000313|EMBL:EHR70207.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
A3-18-all-fractions_k255_1127250_24
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18617..19429)
-----------------
DNA (813bp)
protein (271aa)
Putative fdhD protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEZ8_METPP
fdhD protein
Formate dehydrogenase accessory protein {ECO:0000313|EMBL:EWS53463.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
A3-18-all-fractions_k255_1127250_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19477..19869)
-----------------
DNA (393bp)
protein (131aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEZ6_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM94135.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_1127250_26
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19884..21020)
-----------------
DNA (1137bp)
protein (379aa)
formate dehydrogenase subunit gamma (EC:1.2.1.2)
Formate dehydrogenase gamma subunit {ECO:0000313|EMBL:ABM94134.1}; EC=1.2.1.2 {ECO:0000313|EMBL:ABM94134.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Formate dehydrogenase gamma subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEZ5_METPP
A3-18-all-fractions_k255_1127250_27
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21035..21265)
-----------------
DNA (231bp)
protein (77aa)
Putative lipoprotein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q474W7_CUPPJ
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AAZ60066.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
A3-18-all-fractions_k255_1127250_28
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21262..21897)
-----------------
DNA (636bp)
protein (212aa)
formate dehydrogenase iron-sulfur subunit (EC:1.2.1.2)
Formate dehydrogenase iron-sulfur subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEZ3_METPP
Formate dehydrogenase iron-sulfur subunit {ECO:0000313|EMBL:EWS53229.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
A3-18-all-fractions_k255_1127250_29
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21923..24877)
-----------------
DNA (2955bp)
protein (985aa)
Formate dehydrogenase H {ECO:0000313|EMBL:EWS58536.1}; EC=1.1.99.33 {ECO:0000313|EMBL:EWS58536.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
formate dehydrogenase large subunit (EC:1.2.1.2)
Formate dehydrogenase large subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SEZ2_METPP
A3-18-all-fractions_k255_1127250_30
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24910..25116)
-----------------
DNA (207bp)
protein (69aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJH3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70194.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
twin-arginine translocation pathway signal
Displaying items 1-30 of 62 in total

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