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A3-18-all-fractions_k255_3215535

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-18-all-fractions_k255_3215535_1
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..931
DNA (930bp) protein (310aa)
Conserved hypothetical transmembrane protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHA8_METPP
hypothetical protein
Modulator of FtsH protease HflK {ECO:0000313|EMBL:EWS61352.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
A3-18-all-fractions_k255_3215535_2
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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954..1865
DNA (912bp) protein (304aa)
hflC; protease activity modulator HflC (EC:3.4.-.-)
Protein HflC n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV63_9BURK
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
A3-18-all-fractions_k255_3215535_3
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1862..2065
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHA6_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM94945.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3215535_4
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2142..3332
DNA (1191bp) protein (397aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHA5_METPP
ATP phosphoribosyltransferase
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3215535_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3365..4705
DNA (1341bp) protein (447aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIE6_9BURK
A3-18-all-fractions_k255_3215535_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4716..5237
DNA (522bp) protein (174aa)
Putative transferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV67_9BURK
hypothetical protein
Putative transferase {ECO:0000313|EMBL:EGJ12235.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
A3-18-all-fractions_k255_3215535_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5443..7644
DNA (2202bp) protein (734aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
exoribonuclease II (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WIE4_9BURK
A3-18-all-fractions_k255_3215535_8
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7652..9145)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV69_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12237.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
A3-18-all-fractions_k255_3215535_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9153..10499)
DNA (1347bp) protein (449aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WID9_9BURK
dadA; D-amino acid dehydrogenase small subunit
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3215535_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10504..11859)
DNA (1356bp) protein (452aa)
Amidase {ECO:0000313|EMBL:EGJ12239.1}; EC=3.5.1.4 {ECO:0000313|EMBL:EGJ12239.1};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
amidase (EC:3.5.1.-)
Amidase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV71_9BURK
A3-18-all-fractions_k255_3215535_11
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12001..12747
DNA (747bp) protein (249aa)
30S ribosomal protein S2 n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSU1_RUBGI
rpsB; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
A3-18-all-fractions_k255_3215535_12
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12881..13771
DNA (891bp) protein (297aa)
Elongation factor Ts n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVS1_RAMTT
elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
A3-18-all-fractions_k255_3215535_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13853..14563
DNA (711bp) protein (237aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
pyrH; uridylate kinase (EC:2.7.4.-)
uridylate kinase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003494B08
A3-18-all-fractions_k255_3215535_14
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14635..15195
DNA (561bp) protein (187aa)
ribosome recycling factor n=1 Tax=Caldimonas manganoxidans RepID=UPI00036D5806
rrf; ribosome recycling factor Rrf
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3215535_15
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15201..15968
DNA (768bp) protein (256aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Isoprenyl transferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH94_METPP
A3-18-all-fractions_k255_3215535_16
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15971..16807
DNA (837bp) protein (279aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
phosphatidate cytidylyltransferase membrane protein (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH93_METPP
A3-18-all-fractions_k255_3215535_17
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16809..18005
DNA (1197bp) protein (399aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH92_METPP
A3-18-all-fractions_k255_3215535_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18002..19369
DNA (1368bp) protein (456aa)
Putative membrane protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH91_METPP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3215535_19
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19381..21684
DNA (2304bp) protein (768aa)
Outer membrane protein assembly factor BamA n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH90_METPP
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
outer membrane signal peptide protein
A3-18-all-fractions_k255_3215535_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21706..22197
DNA (492bp) protein (164aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HST2_RUBGI
ompH; outer membrane chaperone Skp
Outer membrane chaperone Skp (OmpH) {ECO:0000313|EMBL:BAL96069.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
A3-18-all-fractions_k255_3215535_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22198..23250
DNA (1053bp) protein (351aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRC7_9BURK
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
A3-18-all-fractions_k255_3215535_22
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23247..23690
DNA (444bp) protein (148aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-ACP dehydratase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002DC5947
Tax=GWA2_Curvibacter_64_110_curated
A3-18-all-fractions_k255_3215535_23
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23713..24501
DNA (789bp) protein (263aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00064156}; Short=UDP-N-acetylglucosamine acyltransferase {ECO:0000256|HAMAP-Rule:MF_00387};; EC=2.3.1.129 {ECO:0000256|HAMAP-Rule:MF_00387, ECO:0000256|SAAS:SAAS00001267};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH87_METPP
A3-18-all-fractions_k255_3215535_24
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24534..25652
DNA (1119bp) protein (373aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200}; EC=2.4.1.182 {ECO:0000256|HAMAP-Rule:MF_00392, ECO:0000256|SAAS:SAAS00093200};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Lipid-A-disaccharide synthase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXI2_LEPCP
A3-18-all-fractions_k255_3215535_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25624..26292
DNA (669bp) protein (223aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII 2 {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII 2 {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Ribonuclease HII 2 n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=RNH22_METPP
A3-18-all-fractions_k255_3215535_26
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26292..27065
DNA (774bp) protein (258aa)
Putative tRNA/rRNA methyltransferase protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SH84_METPP
tRNA/rRNA methyltransferase
Putative tRNA/rRNA methyltransferase protein {ECO:0000313|EMBL:ABM94923.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3215535_27
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27047..27892)
DNA (846bp) protein (282aa)
Putative membrane protein DMT domain n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NHF6_RALSL
putative membrane protein; DMT domain
Putative membrane protein DMT domain {ECO:0000313|EMBL:CBJ40330.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
A3-18-all-fractions_k255_3215535_28
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27900..28781)
DNA (882bp) protein (294aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
PEP synthetase regulatory protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00037EB63D
hypothetical protein
Displaying 28 items

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