ggKbase home page

A3-18-all-fractions_k255_3472484

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-18-all-fractions_k255_3472484_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..667
DNA (666bp) protein (222aa)
Helix-turn-helix, AraC domain n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4I6_VARPE
helix-turn-helix, arac domain
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17845.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
A3-18-all-fractions_k255_3472484_2
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

722..1213
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9S3_9BURK
tetratricopeptide TPR_2
Tax=CG_Rhodof_02
A3-18-all-fractions_k255_3472484_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1221..1835)
DNA (615bp) protein (205aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2Y6_LEPCP
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ACB35642.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-18-all-fractions_k255_3472484_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1832..3427)
DNA (1596bp) protein (532aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
glucose-6-phosphate isomerase n=1 Tax=Caldimonas manganoxidans RepID=UPI00035F93BC
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3472484_5
Leptothrix ochracea, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3427..4374)
DNA (948bp) protein (316aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|RuleBase:RU004155};; TaxID=735332 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix ochracea L12.;"
Transaldolase (EC:2.2.1.2)
transaldolase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036318DD
A3-18-all-fractions_k255_3472484_6
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4549..6003
DNA (1455bp) protein (485aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
glucose-6-phosphate 1-dehydrogenase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003618CC3
A3-18-all-fractions_k255_3472484_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6009..6878
DNA (870bp) protein (290aa)
transcriptional regulator n=1 Tax=Caldimonas manganoxidans RepID=UPI00035DAAEE
RpiR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3472484_8
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6888..7172)
DNA (285bp) protein (95aa)
Putative signal peptide protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKG0_METPP
signal peptide protein
Putative signal peptide protein {ECO:0000313|EMBL:ABM96049.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3472484_9
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7186..7821)
DNA (636bp) protein (212aa)
signal peptide protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B3A061
toluene tolerance family protein
Toluene tolerance family protein {ECO:0000313|EMBL:ACB35648.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-18-all-fractions_k255_3472484_10
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7926..8732)
DNA (807bp) protein (269aa)
VacJ family lipoprotein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2Z3_LEPCP
Lipoprotein {ECO:0000313|EMBL:KDB52538.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
VacJ family lipoprotein
A3-18-all-fractions_k255_3472484_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8744..9259)
DNA (516bp) protein (172aa)
ABC-type transport system involved in resistance to organic solvents, periplasmic component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ79_9BURK
ABC-type transport system involved in resistance to organic solvents, periplasmic component {ECO:0000313|EMBL:EHR70033.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
putative signal peptide protein, toluene tolerance Ttg2C-like
A3-18-all-fractions_k255_3472484_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9286..10065)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKK6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ08874.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
A3-18-all-fractions_k255_3472484_13
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10062..10955)
DNA (894bp) protein (298aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component id=1270382 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ABC transporter ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-18-all-fractions_k255_3472484_14
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11062..14844)
DNA (3783bp) protein (1261aa)
Pilus tip-associated protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLC2_METPP
pilY1; pilus tip-associated protein
Pilus tip-associated protein {ECO:0000313|EMBL:ABM96361.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3472484_15
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14861..15508)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLC1_METPP
hypothetical protein
Tfp pilus assembly protein PilX {ECO:0000313|EMBL:EWS59455.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
A3-18-all-fractions_k255_3472484_16
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15505..16698)
DNA (1194bp) protein (398aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLC0_METPP
pilW; fimbrial biogenesis protein
Fimbrial biogenesis protein {ECO:0000313|EMBL:ABM96359.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3472484_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16695..17093)
DNA (399bp) protein (133aa)
fimbrial biogenesis protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A00AA
fimbrial biogenesis protein
Fimbrial biogenesis protein {ECO:0000313|EMBL:ADU39075.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
A3-18-all-fractions_k255_3472484_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17095..17691)
DNA (597bp) protein (199aa)
Fimbrial biogenesis protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V153_VARPE
fimbrial biogenesis protein
Fimbrial biogenesis protein {ECO:0000313|EMBL:ADU39076.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
A3-18-all-fractions_k255_3472484_19
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17682..18086)
DNA (405bp) protein (135aa)
Fimbrial biogenesis protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLB7_METPP
pilE; fimbrial biogenesis protein
Fimbrial biogenesis protein {ECO:0000313|EMBL:ABM96356.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
A3-18-all-fractions_k255_3472484_20
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18253..19731)
DNA (1479bp) protein (493aa)
gltD; glutamate synthase subunit beta (EC:1.4.1.14)
Glutamate synthase (NADH) small subunit {ECO:0000313|EMBL:ABM96055.1}; EC=1.4.1.14 {ECO:0000313|EMBL:ABM96055.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Glutamate synthase (NADH) small subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKG6_METPP
A3-18-all-fractions_k255_3472484_21
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19767..24497)
DNA (4731bp) protein (1577aa)
glutamate synthase (NADH) large subunit (EC:1.4.1.14)
Glutamate synthase (NADH) large subunit {ECO:0000313|EMBL:ABM96056.1}; EC=1.4.1.14 {ECO:0000313|EMBL:ABM96056.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
glutamate synthase n=1 Tax=Caldimonas manganoxidans RepID=UPI000373BC0B
A3-18-all-fractions_k255_3472484_22
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24613..25317)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035D6710
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB35655.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-18-all-fractions_k255_3472484_23
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25335..26471)
DNA (1137bp) protein (379aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKH0_METPP
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
A3-18-all-fractions_k255_3472484_24
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26492..27586)
DNA (1095bp) protein (365aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000376BED5
A3-18-all-fractions_k255_3472484_25
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27596..28147)
DNA (552bp) protein (184aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Shikimate kinase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y303_LEPCP
A3-18-all-fractions_k255_3472484_26
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28229..29296)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T6J9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT69363.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
hypothetical protein
A3-18-all-fractions_k255_3472484_27
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29935..30918)
DNA (984bp) protein (328aa)
Type IV pilus secretin PilQ/competence protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ69_9BURK
Type IV pilus secretin PilQ/competence protein {ECO:0000313|EMBL:EHR70023.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
pilQ; type IV pilus assembly protein PilQ
Displaying 27 items

View Taxonomy