ggKbase home page

H2-16-all-fractions_k255_4399228

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_4399228_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1091)
DNA (1089bp) protein (363aa)
Chaperone protein DnaK n=2 Tax=Novosphingobium RepID=F6IPJ8_9SPHN
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
dnaK; molecular chaperone DnaK
H2-16-all-fractions_k255_4399228_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1218..1958)
DNA (741bp) protein (247aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0V4_9SPHN
3-oxoacyl-ACP reductase
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AGH48089.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_4399228_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1959..2885)
DNA (927bp) protein (309aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ACP S-malonyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DAE
ACP S-malonyltransferase
H2-16-all-fractions_k255_4399228_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3036..4355
DNA (1320bp) protein (440aa)
amino acid permease, partial n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000365C160
Uncharacterized protein {ECO:0000313|EMBL:GAO38984.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
amino acid permease-associated protein
H2-16-all-fractions_k255_4399228_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4288..5466)
DNA (1179bp) protein (393aa)
Rieske (2Fe-2S) protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W985_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO38985.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Rieske (2Fe-2S) protein
H2-16-all-fractions_k255_4399228_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5548..6072)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C144
DNA, contig: SP643 {ECO:0000313|EMBL:GAN14722.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6320..6730
DNA (411bp) protein (137aa)
30S ribosomal protein S6 n=1 Tax=Sphingomonas wittichii RepID=UPI0002EB11B4
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
H2-16-all-fractions_k255_4399228_8
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6730..6954
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBJ8_9SPHN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
rpsR; 30S ribosomal protein S18
H2-16-all-fractions_k255_4399228_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6967..7581
DNA (615bp) protein (205aa)
50S ribosomal protein L9 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003063C70
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
50S ribosomal protein L9
H2-16-all-fractions_k255_4399228_10
Arabidopsis thaliana, Arabidopsis, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

7747..8319
DNA (573bp) protein (191aa)
Histone-H4-like protein n=1 Tax=Arabidopsis thaliana RepID=Q681A9_ARATH
Histone-H4-like protein {ECO:0000313|EMBL:BAD43471.1}; TaxID=3702 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.;" source="Arabidopsis thaliana (Mouse-ear cress).;"
H2-16-all-fractions_k255_4399228_11
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8329..8979)
DNA (651bp) protein (217aa)
Glutathione S-transferase-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GRC5_SPHAL
glutathione S-transferase-like protein
Glutathione S-transferase-like protein {ECO:0000313|EMBL:ABF53797.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
H2-16-all-fractions_k255_4399228_12
unknown

Not on your lists

9066..9212
DNA (147bp) protein (49aa)

This feature has no annotations

H2-16-all-fractions_k255_4399228_13
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9209..9703)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S9D7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51119.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_4399228_14
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9797..10360
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036CFE3A
Putative Xre family DNA-binding protein {ECO:0000313|EMBL:GAO37970.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
XRE family transcriptional regulator
H2-16-all-fractions_k255_4399228_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10491..11237)
DNA (747bp) protein (249aa)
peptidase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489778
Uncharacterized protein {ECO:0000313|EMBL:GAO40206.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
proteasome-type protease
H2-16-all-fractions_k255_4399228_16
unknown

Not on your lists

11374..11541
DNA (168bp) protein (56aa)

This feature has no annotations

H2-16-all-fractions_k255_4399228_17
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11736..12884)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C88
Uncharacterized protein {ECO:0000313|EMBL:EZP84327.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_18
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12966..13898)
DNA (933bp) protein (311aa)
Transcriptional regulator, MarR family n=2 Tax=Sphingomonas wittichii RepID=A5V4K8_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO39008.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
MarR family transcriptional regulator
H2-16-all-fractions_k255_4399228_19
unknown

Not on your lists

14053..14328
DNA (276bp) protein (92aa)

This feature has no annotations

H2-16-all-fractions_k255_4399228_20
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14325..15152)
DNA (828bp) protein (276aa)
CysQ protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KJ39_9PROT
CysQ protein {ECO:0000313|EMBL:EKE77300.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cysQ; CysQ protein
H2-16-all-fractions_k255_4399228_21
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15152..15934)
DNA (783bp) protein (261aa)
PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1402B
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABC62388.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
H2-16-all-fractions_k255_4399228_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16136..17458
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZXE4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50059.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_23
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17566..18396)
DNA (831bp) protein (277aa)
OOP-family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMR3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39347.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
OmpA/MotB domain-containing protein
H2-16-all-fractions_k255_4399228_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18551..18877)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028800B6
Sphingomonas taxi strain 30a NODE_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29118.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_25
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19158..19532
DNA (375bp) protein (125aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
H2-16-all-fractions_k255_4399228_26
unknown

Not on your lists

comp(19529..20056)
DNA (528bp) protein (176aa)

This feature has no annotations

H2-16-all-fractions_k255_4399228_27
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20433..21359
DNA (927bp) protein (309aa)
UPI0003D05115 related cluster n=1 Tax=unknown RepID=UPI0003D05115
Transposase ISSpo8 {ECO:0000313|EMBL:ESZ88085.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_28
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21352..22338
DNA (987bp) protein (329aa)
UPI0003D06417 related cluster n=1 Tax=unknown RepID=UPI0003D06417
Uncharacterized protein {ECO:0000313|EMBL:KCZ64330.1}; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
hypothetical protein
H2-16-all-fractions_k255_4399228_29
unknown

Not on your lists

comp(22335..22871)
DNA (537bp) protein (179aa)

This feature has no annotations

H2-16-all-fractions_k255_4399228_30
unknown

Not on your lists

23286..23909
DNA (624bp) protein (208aa)

This feature has no annotations

Displaying items 1-30 of 158 in total

View Taxonomy