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H2-16-all-fractions_k255_6222760

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_6222760_1
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..1384)
DNA (1383bp) protein (461aa)
Histidine kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQE3_9BURK
Histidine kinase {ECO:0000313|EMBL:EHR71273.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
signal transduction histidine kinase-like protein
H2-16-all-fractions_k255_6222760_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1458..2240)
DNA (783bp) protein (261aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQE4_9BURK
response regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_6222760_3
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2401..3402)
DNA (1002bp) protein (334aa)
alcohol dehydrogenase, zinc-binding domain-containing protein (EC:1.6.5.5)
Zinc-binding alcohol dehydrogenase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQF6_9BURK
Zinc-binding alcohol dehydrogenase {ECO:0000313|EMBL:EGJ10574.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
H2-16-all-fractions_k255_6222760_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3536..4309
DNA (774bp) protein (258aa)
surE; stationary-phase survival protein SurE (EC:3.1.3.5)
5'-nucleotidase SurE {ECO:0000255|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000255|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000255|HAMAP-Rule:MF_00060}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
5'-nucleotidase SurE n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=SURE_RUBGI
H2-16-all-fractions_k255_6222760_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4306..5127
DNA (822bp) protein (274aa)
pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase Pcm (EC:2.1.1.77)
L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQF8_9BURK
L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:EGJ10576.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
H2-16-all-fractions_k255_6222760_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5145..6065
DNA (921bp) protein (307aa)
Peptidase m23 n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQF9_9BURK
Peptidase m23 {ECO:0000313|EMBL:EGJ10577.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
nlpD; lipoprotein NlpD
H2-16-all-fractions_k255_6222760_7
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6324..6686
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI0003770D1F
TonB family domain-containing protein {ECO:0000313|EMBL:KFC65692.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
TonB family protein
H2-16-all-fractions_k255_6222760_8
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6843..8390
DNA (1548bp) protein (516aa)
chemotaxis protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002EC2654
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJL92601.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
chemotaxis sensory transducer
H2-16-all-fractions_k255_6222760_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8542..10083
DNA (1542bp) protein (514aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA methyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C13A8
H2-16-all-fractions_k255_6222760_10
unknown

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comp(10076..10306)
DNA (231bp) protein (77aa)

This feature has no annotations

H2-16-all-fractions_k255_6222760_11
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10324..10776)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00037E0FA4
hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:AJQ92901.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
H2-16-all-fractions_k255_6222760_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10964..11662)
DNA (699bp) protein (233aa)
membrane protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003476A72
FtsH-interacting integral membrane protein {ECO:0000313|EMBL:EHR71281.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
H2-16-all-fractions_k255_6222760_13
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11985..13163
DNA (1179bp) protein (393aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF84_METPP
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_6222760_14
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13163..14005
DNA (843bp) protein (281aa)
carbamoyl phosphate synthase large subunit n=1 Tax=Caldimonas manganoxidans RepID=UPI000375FE08
carbamoyl-phosphate synthase large subunit
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_6222760_15
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14012..16438
DNA (2427bp) protein (809aa)
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SF85_METPP
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_6222760_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16549..17025
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI72_9BURK
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
transcription elongation factor GreA
H2-16-all-fractions_k255_6222760_17
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17169..17624
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344EBFE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWS61604.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
H2-16-all-fractions_k255_6222760_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17642..18109)
DNA (468bp) protein (156aa)
RNA-binding protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034DAA94
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H2-16-all-fractions_k255_6222760_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18130..18798
DNA (669bp) protein (223aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
23S rRNA methyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036128CE
ribosomal RNA methyltransferase RrmJ/FtsJ
H2-16-all-fractions_k255_6222760_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18966..20864
DNA (1899bp) protein (633aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent metalloprotease n=1 Tax=Ideonella sp. B508-1 RepID=UPI000344FDA9
H2-16-all-fractions_k255_6222760_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20946..21779
DNA (834bp) protein (278aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
folP; dihydropteroate synthase FolP (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WI77_9BURK
H2-16-all-fractions_k255_6222760_22
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21845..22267
DNA (423bp) protein (141aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQH2_9BURK
Displaying 22 items

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