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H3-18-all-fractions_k255_2232597

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_2232597_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..380
DNA (378bp) protein (126aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DIM6_BRAJP
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIZ38519.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ABC transporter-like protein
H3-18-all-fractions_k255_2232597_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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384..1079
DNA (696bp) protein (232aa)
Urea ABC transporter ATP-binding protein UrtE n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGL9_9BRAD
Urea ABC transporter ATP-binding protein UrtE {ECO:0000313|EMBL:ERF83606.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ABC transporter ATP-binding protein
H3-18-all-fractions_k255_2232597_3
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1180..2016
DNA (837bp) protein (279aa)
urease accessory protein ureD n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035CA3EE
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
urease accessory protein UreD
H3-18-all-fractions_k255_2232597_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2073..2375
DNA (303bp) protein (101aa)
ureA; urease subunit gamma (EC:3.5.1.5)
Urease subunit gamma {ECO:0000255|HAMAP-Rule:MF_00739}; EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_00739};; Urea amidohydrolase subunit gamma {ECO:0000255|HAMAP-Rule:MF_00739}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Urease subunit gamma n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=URE3_RHOP5
H3-18-all-fractions_k255_2232597_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2502..2807
DNA (306bp) protein (102aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Urease subunit beta n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMG0_9BRAD
urease beta subunit
H3-18-all-fractions_k255_2232597_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2951..4663
DNA (1713bp) protein (571aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Urease subunit alpha n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P034_9BRAD
ureC; urease subunit alpha
H3-18-all-fractions_k255_2232597_7
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4854..5153
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0F4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL74241.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
H3-18-all-fractions_k255_2232597_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5178..5477
DNA (300bp) protein (100aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYY6_RHOP2
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:KIZ46558.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
antibiotic biosynthesis monooxygenase
H3-18-all-fractions_k255_2232597_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5542..6153
DNA (612bp) protein (204aa)
Urease accessory protein UreE n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFL7_9BRAD
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
H3-18-all-fractions_k255_2232597_10
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6150..6872
DNA (723bp) protein (241aa)
Urease accessory protein UreF n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H1G8_9BRAD
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
urease accessory protein UreF
H3-18-all-fractions_k255_2232597_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7036..7734
DNA (699bp) protein (233aa)
Urease accessory protein UreG n=2 Tax=Bradyrhizobium RepID=H0RXX1_9BRAD
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ureG; urease accessory protein UreG
H3-18-all-fractions_k255_2232597_12
unknown

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7688..7882
DNA (195bp) protein (65aa)

This feature has no annotations

H3-18-all-fractions_k255_2232597_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8006..9664
DNA (1659bp) protein (553aa)
histidine kinase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031F07D0
Bradyrhizobium elkanii strain UASWS1015 Contig158, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52451.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative signal transduction histidine kinase with chase domain
H3-18-all-fractions_k255_2232597_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9796..10344)
DNA (549bp) protein (183aa)
RNA polymerase sigma factor n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W3V7_9BRAD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
RNA polymerase sigma factor
H3-18-all-fractions_k255_2232597_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10344..10544)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035C1FA9
Bradyrhizobium elkanii strain UASWS1015 Contig158, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52455.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
H3-18-all-fractions_k255_2232597_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10813..11619
DNA (807bp) protein (269aa)
chemotaxis protein CheY n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DB6977
Phyllosphere-induced regulator PhyR {ECO:0000313|EMBL:KJC39326.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
Phyllosphere-induced regulator PhyR
H3-18-all-fractions_k255_2232597_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11713..12351)
DNA (639bp) protein (213aa)
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C5524
Transcriptional regulator {ECO:0000313|EMBL:EJN12668.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator
H3-18-all-fractions_k255_2232597_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12517..12726
DNA (210bp) protein (70aa)
Ferredoxin n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HIK8_9BRAD
Ferredoxin {ECO:0000313|EMBL:KJC59255.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ferredoxin
H3-18-all-fractions_k255_2232597_19
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12807..14021
DNA (1215bp) protein (405aa)
Phosphatidylserine decarboxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3F0_9BRAD
Cytochrome P450 {ECO:0000313|EMBL:KJC45852.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
H3-18-all-fractions_k255_2232597_20

Not on your lists

14136..15098
DNA (963bp) protein (321aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037F187F
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48904.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
H3-18-all-fractions_k255_2232597_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15353..16051)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2Q9_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50721.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
H3-18-all-fractions_k255_2232597_22
unknown

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16154..16288
DNA (135bp) protein (45aa)

This feature has no annotations

H3-18-all-fractions_k255_2232597_23
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16422..16808
DNA (387bp) protein (129aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H2U1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC60594.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
Displaying 23 items

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