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H3-18-all-fractions_k255_4706725

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_4706725_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(3..272)
DNA (270bp) protein (90aa)
Predicted permease, DMT superfamily {ECO:0000313|EMBL:CDM64986.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_4706725_2
unknown

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comp(366..566)
DNA (201bp) protein (67aa)

This feature has no annotations

H3-18-all-fractions_k255_4706725_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(597..2066)
DNA (1470bp) protein (490aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) id=2937410 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
H3-18-all-fractions_k255_4706725_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2097..3080)
DNA (984bp) protein (328aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:CDM64988.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CDM64988.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
pyruvate dehydrogenase subunit beta n=1 Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI00036C919C
H3-18-all-fractions_k255_4706725_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3166..4278)
DNA (1113bp) protein (371aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component, alpha subunit n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFX7_9BACT
H3-18-all-fractions_k255_4706725_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4574..6556)
DNA (1983bp) protein (661aa)
Putative metal-dependent phosphohydrolase n=1 Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NME4_9BACT
Diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG-containing protein {ECO:0000313|EMBL:CDM64990.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
diguanylate cyclase and metal dependent phosphohydrolase
H3-18-all-fractions_k255_4706725_7
Drosophila mojavensis, Drosophila, Diptera, Neoptera, Arthropoda, Metazoa

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7172..7492
DNA (321bp) protein (107aa)
GI15309 n=1 Tax=Drosophila mojavensis RepID=B4L1G3_DROMO
GI15309 {ECO:0000313|EMBL:EDW06684.1}; TaxID=7230 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.;" source="Drosophila mojavensis (Fruit fly).;"
lipoprotein
H3-18-all-fractions_k255_4706725_8
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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7589..8479
DNA (891bp) protein (297aa)
Ribonuclease D n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1A2_CALAS
rnd; ribonuclease D
Ribonuclease D {ECO:0000313|EMBL:BAL99039.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
H3-18-all-fractions_k255_4706725_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(8486..10585)
DNA (2100bp) protein (700aa)
Thioredoxin domain containing protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGW5_CHLTF
Highly conserved protein containing a thioredoxin domain {ECO:0000313|EMBL:CDM64993.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
thioredoxin domain-containing protein
H3-18-all-fractions_k255_4706725_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10760..12466
DNA (1707bp) protein (569aa)
Flavin-dependent dehydrogenase {ECO:0000313|EMBL:CDM64097.1}; EC=1.5.5.1 {ECO:0000313|EMBL:CDM64097.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) n=1 Tax=mine drainage metagenome RepID=E6Q6S9_9ZZZZ
electron-transferring-flavoprotein dehydrogenase
H3-18-all-fractions_k255_4706725_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12548..12988
DNA (441bp) protein (147aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66224.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_4706725_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(13023..13259)
DNA (237bp) protein (79aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Methylophilus RepID=UPI0003821704
H3-18-all-fractions_k255_4706725_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13353..14024)
DNA (672bp) protein (224aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEB1_CHLTF
H3-18-all-fractions_k255_4706725_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(14017..14898)
DNA (882bp) protein (294aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEB0_CHLTF
TIGR00255 family protein {ECO:0000313|EMBL:CDM66227.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
H3-18-all-fractions_k255_4706725_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(15013..16836)
DNA (1824bp) protein (608aa)
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:CDM66228.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDM66228.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZIC5_TERRK
multidrug ABC transporter ATPase/permease
H3-18-all-fractions_k255_4706725_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17099..17761
DNA (663bp) protein (221aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6U0L3_BACCJ
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:CDM66229.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
winged helix family two component transcriptional regulator
H3-18-all-fractions_k255_4706725_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17758..19398
DNA (1641bp) protein (547aa)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RP30_NEMVE
PQQ-like domain {ECO:0000313|EMBL:CDM66230.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_4706725_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

19720..21309
DNA (1590bp) protein (530aa)
Outer membrane protein-like peptidoglycan-associated (Lipo)protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LL45_CHLTF
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:CDM66232.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
outer membrane protein-like peptidoglycan-associated (lipo)protein
H3-18-all-fractions_k255_4706725_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

21441..23537
DNA (2097bp) protein (699aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Two-component sensor kinase id=4982545 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
sensor protein
H3-18-all-fractions_k255_4706725_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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23657..25141
DNA (1485bp) protein (495aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:CDM64893.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Two-component response regulator id=4982546 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
sigma-54 dependent DNA-binding response regulator
H3-18-all-fractions_k255_4706725_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25253..25858
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HYU5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54096.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
H3-18-all-fractions_k255_4706725_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

25880..26536
DNA (657bp) protein (219aa)
O-methyltransferase mdmC (EC:2.1.1.-)
Putative O-methyltransferase mdmC n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHF9_9BACT
Predicted O-methyltransferase {ECO:0000313|EMBL:CDM64892.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
H3-18-all-fractions_k255_4706725_23
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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26588..27784
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LED8_SYNFM
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
H3-18-all-fractions_k255_4706725_24
unknown

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28014..28850
DNA (837bp) protein (279aa)

This feature has no annotations

H3-18-all-fractions_k255_4706725_25
unknown

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28886..29065
DNA (180bp) protein (60aa)

This feature has no annotations

H3-18-all-fractions_k255_4706725_26
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

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29117..30169
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T865_MESCW
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
H3-18-all-fractions_k255_4706725_27
Candidatus Kuenenia stuttgartiensis, Candidatus Kuenenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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30166..31260
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q332_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAJ74424.1}; TaxID=174633 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Kuenenia.;" source="Candidatus Kuenenia stuttgartiensis.;"
Fe-S oxidoreductase
H3-18-all-fractions_k255_4706725_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31316..31588
DNA (273bp) protein (91aa)
hypothetical protein
Coenzyme PQQ synthesis protein D (PqqD) {ECO:0000313|EMBL:AKH42782.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
H3-18-all-fractions_k255_4706725_29
unknown

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comp(31585..32025)
DNA (441bp) protein (147aa)

This feature has no annotations

Displaying 29 items

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