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H3-18-all-fractions_k255_977860

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_977860_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1086
DNA (1086bp) protein (362aa)
UPI0003CE8C84 related cluster n=1 Tax=unknown RepID=UPI0003CE8C84
Transposase {ECO:0000313|EMBL:ESW90028.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
transposase
H3-18-all-fractions_k255_977860_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1142..1717)
DNA (576bp) protein (192aa)
Carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZK3_VARPS
Carboxymethylenebutenolidase {ECO:0000313|EMBL:KGM33349.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
H3-18-all-fractions_k255_977860_3
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1936..2451)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. SJ98 RepID=K8R485_9BURK
Strain MEJ086 contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02147.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
hypothetical protein
H3-18-all-fractions_k255_977860_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(2951..3379)
DNA (429bp) protein (143aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92521.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_5
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3446..3703
DNA (258bp) protein (86aa)
MerR family transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2I4_9RHIZ
MerR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
H3-18-all-fractions_k255_977860_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3703..4038
DNA (336bp) protein (112aa)
UPF0060 membrane protein Y88_2473 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6M9_9SPHN
UPF0060 membrane protein NMD1_01450 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
H3-18-all-fractions_k255_977860_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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4829..6379
DNA (1551bp) protein (517aa)
ATPase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MKM4_RHOM4
ATPase
ATPase {ECO:0000313|EMBL:ACY49688.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
H3-18-all-fractions_k255_977860_8
unknown

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7088..7810
DNA (723bp) protein (241aa)

This feature has no annotations

H3-18-all-fractions_k255_977860_9

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7807..8691
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD1_BRAJP
Alpha/beta hydrolase family {ECO:0000313|EMBL:AIA15875.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
H3-18-all-fractions_k255_977860_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8813..9433
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P1U4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH38222.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
H3-18-all-fractions_k255_977860_11

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comp(9463..9867)
DNA (405bp) protein (135aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEK8_GEMAT
NADPH-dependent 7-cyano-7-deazaguanine reductase
H3-18-all-fractions_k255_977860_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(9973..11676)
DNA (1704bp) protein (568aa)
peptidase S41
Peptidase S41 {ECO:0000313|EMBL:AHG88092.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Periplasmic protease id=4178385 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
H3-18-all-fractions_k255_977860_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(11673..13004)
DNA (1332bp) protein (444aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W380_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88091.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(13763..14677)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEK9_GEMAT
Peptidase S54, rhomboid domain protein
Peptidase S54, rhomboid domain protein {ECO:0000313|EMBL:AHG88432.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_15
unknown

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comp(14837..15529)
DNA (693bp) protein (231aa)

This feature has no annotations

H3-18-all-fractions_k255_977860_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15556..16653)
DNA (1098bp) protein (366aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEL0_GEMAT
D-alanine--D-alanine ligase
H3-18-all-fractions_k255_977860_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(16917..18335)
DNA (1419bp) protein (473aa)
Cystathionine beta-synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM2_GEMAT
Pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG88434.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_18

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comp(18399..18863)
DNA (465bp) protein (155aa)
Gram-negative bacterial tonB protein {ECO:0000313|EMBL:AIA18393.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TonB family protein
H3-18-all-fractions_k255_977860_19
GWA2_WOR_2_53_43_curated, WOR-2, Bacteria

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comp(18996..19949)
DNA (954bp) protein (318aa)
hypothetical protein id=5016976 bin=GWA2_OP3_53_43 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=GWA2_WOR_2_53_43_curated
H3-18-all-fractions_k255_977860_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(20036..22771)
DNA (2736bp) protein (912aa)
DNA mismatch repair protein MutS n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM6_GEMAT
DNA mismatch repair protein mutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(22768..23994)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Eimeria mitis RepID=U6KF78_9EIME
Sporulation domain-containing protein
Sporulation domain-containing protein {ECO:0000313|EMBL:AHG88441.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(24086..25144)
DNA (1059bp) protein (353aa)
Putative DNA polymerase III delta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM8_GEMAT
DNA polymerase III, delta subunit
DNA polymerase III, delta subunit {ECO:0000313|EMBL:AHG88442.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_977860_23
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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25286..25912
DNA (627bp) protein (209aa)
dinB; DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
DNA polymerase IV n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Y5_GEMAT
Displaying 23 items

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