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H3-18-all-fractions_k255_1604695

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_1604695_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1..2793)
DNA (2793bp) protein (931aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTW7_PSEUP id=5223539 bin=16ft_combo_ws3_JS1 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
H3-18-all-fractions_k255_1604695_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2937..3788)
DNA (852bp) protein (284aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WSX8_PSEUU id=5223540 bin=16ft_combo_ws3_JS1 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
binding-protein-dependent transporters inner membrane component
Tax=RBG_16_RIF_WS3X_71_46_curated
H3-18-all-fractions_k255_1604695_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3789..4778)
DNA (990bp) protein (330aa)
ABC-type sugar transport system permease subunit n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AIU2_IGNAJ id=5223541 bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
binding-protein-dependent transporters inner membrane component
Tax=RBG_16_RIF_WS3X_71_46_curated
H3-18-all-fractions_k255_1604695_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(4757..6187)
DNA (1431bp) protein (477aa)
Sugar ABC transporter, periplasmic sugar-binding protein USSDB1B; K10188 lactose/L-arabinose transport system substrate-binding protein id=24457719 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
carbohydrate ABC transporter substrate-binding protein, CUT1 family
Tax=RBG_16_RIF_WS3X_71_46_curated
H3-18-all-fractions_k255_1604695_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(6184..7671)
DNA (1488bp) protein (496aa)
UPI00026CBFC3 related cluster n=1 Tax=unknown RepID=UPI00026CBFC3 id=5223543 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Protein of unknown function DUF2329
Uncharacterized protein {ECO:0000313|EMBL:AHG89210.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(7683..10685)
DNA (3003bp) protein (1001aa)
OmpA-related protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QH43_9DELT
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AHG89209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10763..11767)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LacI family id=4594079 bin=GWC2_Ignavibacteria_56_12 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
H3-18-all-fractions_k255_1604695_8
unknown

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comp(12155..12331)
DNA (177bp) protein (59aa)

This feature has no annotations

H3-18-all-fractions_k255_1604695_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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12359..13006
DNA (648bp) protein (216aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Uracil phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP3_GEMAT
Uracil phosphoribosyl transferase
H3-18-all-fractions_k255_1604695_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13101..13754)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP4_GEMAT
Protein of unknown function DUF2225
Uncharacterized protein {ECO:0000313|EMBL:AHG88598.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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14251..15189
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP5_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH40972.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
H3-18-all-fractions_k255_1604695_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15383..16978)
DNA (1596bp) protein (532aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
tRNA modification GTPase MnmE n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CGR0_ALCDB
tRNA modification GTPase mnmE
H3-18-all-fractions_k255_1604695_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17253..18038)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZS4_GEODF
beta-lactamase domain protein
Beta-lactamase domain protein {ECO:0000313|EMBL:AHG88602.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18360..20180)
DNA (1821bp) protein (607aa)
Membrane protein insertase YidC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP7_GEMAT
Membrane protein oxaA
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(20300..20587)
DNA (288bp) protein (96aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEP8_GEMAT
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
H3-18-all-fractions_k255_1604695_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(20584..20868)
DNA (285bp) protein (95aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Ribonuclease P protein component
H3-18-all-fractions_k255_1604695_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists


comp(21062..21226)
DNA (165bp) protein (55aa)
Ribosomal protein L34 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEQ0_GEMAT
50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21543..22973
DNA (1431bp) protein (477aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G6_GEMAT
Chromosomal replication initiator protein dnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23322..24434
DNA (1113bp) protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA polymerase III subunit beta n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G7_GEMAT
DNA polymerase III, beta subunit
H3-18-all-fractions_k255_1604695_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24457..25065)
DNA (609bp) protein (203aa)
membrane protein n=1 Tax=Halomonas zhanjiangensis RepID=UPI00037288AC
protein of unknown function DUF421
Uncharacterized protein {ECO:0000313|EMBL:AHG87596.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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25369..26040
DNA (672bp) protein (224aa)
Putative transmembrane protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JF21_ANAD2
protein of unknown function DUF4126
Uncharacterized protein {ECO:0000313|EMBL:AHG88677.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_1604695_22
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(26095..26931)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3G8_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH37045.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
H3-18-all-fractions_k255_1604695_23
unknown

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comp(27607..28311)
DNA (705bp) protein (235aa)

This feature has no annotations

Displaying 23 items

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