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H3-18-all-fractions_k255_5752254

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H3-18-all-fractions_k255_5752254_1
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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1..657
DNA (657bp) protein (219aa)
Formate dehydrogenase formation protein FdhE, putative n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L5D4_THERP
formate dehydrogenase formation protein FdhE, putative
Formate dehydrogenase formation protein FdhE, putative {ECO:0000313|EMBL:ACM07052.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
H3-18-all-fractions_k255_5752254_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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847..1935
DNA (1089bp) protein (363aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037E8B58
Oxidoreductase {ECO:0000313|EMBL:KGT75010.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
oxidoreductase
H3-18-all-fractions_k255_5752254_3
unknown

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comp(1988..2266)
DNA (279bp) protein (93aa)

This feature has no annotations

H3-18-all-fractions_k255_5752254_4
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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2325..2717
DNA (393bp) protein (131aa)
MarR family transcriptional regulator id=12557865 bin=CNBR_ACIDO species=Patulibacter americanus genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MarR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
H3-18-all-fractions_k255_5752254_5
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3020..4087
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000366232A
Acriflavin resistance protein AcrA {ECO:0000313|EMBL:KGM57626.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
probable RND multidrug efflux membrane fusion protein
H3-18-all-fractions_k255_5752254_6
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4127..7354
DNA (3228bp) protein (1076aa)
transporter n=1 Tax=Halomonas lutea RepID=UPI00037DC50F
transporter
Transporter {ECO:0000313|EMBL:KHA78419.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
H3-18-all-fractions_k255_5752254_7

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7347..8870
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036EDB74
Uncharacterized protein {ECO:0000313|EMBL:AHN97966.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
RND efflux system, outer membrane lipoprotein, NodT family
H3-18-all-fractions_k255_5752254_8
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8921..9805)
DNA (885bp) protein (295aa)
Alpha/beta superfamily hydrolase n=1 Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RV13_MYCRN
hypothetical protein
Alpha/beta superfamily hydrolase {ECO:0000313|EMBL:AEV71694.1}; TaxID=710685 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae (strain NBB3).;"
H3-18-all-fractions_k255_5752254_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9980..11293
DNA (1314bp) protein (438aa)
Peptidase S16B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN4_GEMAT
peptidase M16 domain protein
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88453.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11290..12759
DNA (1470bp) protein (490aa)
Putative M16B family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN3_GEMAT
Peptidase M16 domain protein {ECO:0000313|EMBL:AHG88452.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
peptidase M16 domain protein
H3-18-all-fractions_k255_5752254_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(12799..13845)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F6A5A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89504.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(13856..17035)
DNA (3180bp) protein (1060aa)
Cation/multidrug efflux pump n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWC8_9BACT
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(17032..18150)
DNA (1119bp) protein (373aa)
CzcB family heavy metal efflux protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UK01_MYXSD
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG89500.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(18147..19436)
DNA (1290bp) protein (430aa)
cobalt-zinc-cadmium resistance protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037EF3AE
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AHG89498.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(19520..20875)
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TWF4_9CHLR
ATP-binding region ATPase domain protein
H3-18-all-fractions_k255_5752254_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(20876..21544)
DNA (669bp) protein (223aa)
transcriptional regulator n=1 Tax=Caldimonas manganoxidans RepID=UPI00037EE44B
transcriptional regulator domain-containing protein
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:AHG89496.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(21558..22478)
DNA (921bp) protein (307aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WHU9_GEOS8
phosphoesterase PA-phosphatase related protein
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:AHG89506.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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22633..23268
DNA (636bp) protein (212aa)
Putative ADP-ribose pyrophosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN1_GEMAT
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AHG88445.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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23621..24262
DNA (642bp) protein (214aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN0_GEMAT
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

24518..25075
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEM9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88443.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25141..25965)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9J5_GEMAT
Peptidoglycan-binding lysin domain-containing protein
Peptidoglycan-binding lysin domain-containing protein {ECO:0000313|EMBL:AHG91271.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
H3-18-all-fractions_k255_5752254_22
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(25986..26780)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MIK8_CORCM
NIPSNAP
NIPSNAP {ECO:0000313|EMBL:AHY48152.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
H3-18-all-fractions_k255_5752254_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26825..27379)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS40_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89418.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
H3-18-all-fractions_k255_5752254_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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27548..29017
DNA (1470bp) protein (490aa)
Transcriptional regulator, GntR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZR3_RUBXD
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AHX14306.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
H3-18-all-fractions_k255_5752254_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(29043..30146)
DNA (1104bp) protein (368aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA polymerase IV n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9Y5_GEMAT
DNA polymerase IV
Displaying 25 items

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