ggKbase home page

S1-16-all-fractions_k255_6792068

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S1-16-all-fractions_k255_6792068_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1..738)
DNA (738bp) protein (246aa)
Radical SAM domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SL8_SOLUE id=5224886 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
radical SAM domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
S1-16-all-fractions_k255_6792068_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(745..2013)
DNA (1269bp) protein (423aa)
Major facilitator superfamily permease id=3393319 bin=GWC2_Ignavibacteria_56_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
major facilitator superfamily transporter
Tax=RBG_16_Acidobacteria_70_10_curated
S1-16-all-fractions_k255_6792068_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

2476..3360
DNA (885bp) protein (295aa)
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=12555425 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP dependent DNA ligase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
S1-16-all-fractions_k255_6792068_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3464..4426)
DNA (963bp) protein (321aa)
hypothetical protein id=12555426 bin=CNBR_ACIDO species=Agarivorans albus genus=Agarivorans taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
S1-16-all-fractions_k255_6792068_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

4829..5530
DNA (702bp) protein (234aa)
cytoplasmic protein id=12555427 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S1-16-all-fractions_k255_6792068_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5527..6396
DNA (870bp) protein (290aa)
hypothetical protein; K06872 uncharacterized protein id=12555428 bin=CNBR_ACIDO species=Spirochaeta bajacaliforniensis genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S1-16-all-fractions_k255_6792068_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

6405..6971
DNA (567bp) protein (189aa)
LemA family protein; K03744 LemA protein id=12555429 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
LemA family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S1-16-all-fractions_k255_6792068_8
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(6925..9126)
DNA (2202bp) protein (734aa)
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD92_CHLTF
dipeptidyl aminopeptidase/acylaminoacyl-peptidase
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase {ECO:0000313|EMBL:AEP11952.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
S1-16-all-fractions_k255_6792068_9
unknown

Not on your lists

comp(9163..9306)
DNA (144bp) protein (48aa)

This feature has no annotations

S1-16-all-fractions_k255_6792068_10
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

9318..11870
DNA (2553bp) protein (851aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S1-16-all-fractions_k255_6792068_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

11867..13396
DNA (1530bp) protein (510aa)
hypothetical protein id=12555431 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S1-16-all-fractions_k255_6792068_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

13551..14420
DNA (870bp) protein (290aa)
hypothetical protein id=12555044 bin=CNBR_ACIDO species=Rudaea cellulosilytica genus=Rudaea taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
membrane protease subunit, stomatin/prohibitin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S1-16-all-fractions_k255_6792068_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

14508..14714
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030D3D3A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S1-16-all-fractions_k255_6792068_14
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

14787..15803
DNA (1017bp) protein (339aa)
Alpha/beta hydrolase; K07019 id=12555432 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative alpha/beta-hydrolase fold family hydrolase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
S1-16-all-fractions_k255_6792068_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16027..16749)
DNA (723bp) protein (241aa)
hypothetical protein id=12555433 bin=CNBR_ACIDO species=Zavarzinella formosa genus=Zavarzinella taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
S1-16-all-fractions_k255_6792068_16
unknown

Not on your lists

16771..16950
DNA (180bp) protein (60aa)

This feature has no annotations

S1-16-all-fractions_k255_6792068_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16897..17253)
DNA (357bp) protein (119aa)
RNP-1 like RNA-binding protein id=12554823 bin=CNBR_ACIDO species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNP-1 like RNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S1-16-all-fractions_k255_6792068_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

17540..18352
DNA (813bp) protein (271aa)
electron transport protein SCO1/SenC; K07152 id=12555446 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
electron transport protein SCO1/SenC
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S1-16-all-fractions_k255_6792068_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

18352..19044
DNA (693bp) protein (231aa)
hypothetical protein id=12555447 bin=CNBR_ACIDO species=Bdellovibrio exovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S1-16-all-fractions_k255_6792068_20
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(19054..19356)
DNA (303bp) protein (101aa)
hypothetical protein id=12555448 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S1-16-all-fractions_k255_6792068_21
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

19428..20156
DNA (729bp) protein (243aa)
hypothetical protein; K06896 id=12555449 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S1-16-all-fractions_k255_6792068_22
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20223..21020
DNA (798bp) protein (266aa)
Short-chain dehydrogenase/reductase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EQ99_MODMB
short-chain dehydrogenase
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:CCH85562.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
S1-16-all-fractions_k255_6792068_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

21130..22425
DNA (1296bp) protein (432aa)
RND transporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B6C2B5
RND family efflux transporter MFP subunit
Tax=RBG_16_Acidobacteria_70_10_curated
S1-16-all-fractions_k255_6792068_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

22425..23129
DNA (705bp) protein (235aa)
ABC transporter related protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L8R1_9BACT
ABC transporter ATP-binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
S1-16-all-fractions_k255_6792068_25
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23133..24317
DNA (1185bp) protein (395aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q3G2_DESAF
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
S1-16-all-fractions_k255_6792068_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

24319..25491
DNA (1173bp) protein (391aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR80_KORVE
MacB-like periplasmic core domain protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S1-16-all-fractions_k255_6792068_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(25651..26520)
DNA (870bp) protein (290aa)
Stearoyl-CoA 9-desaturase n=1 Tax=Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639 RepID=N1VS86_9LEPT
fatty-acid desaturase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
S1-16-all-fractions_k255_6792068_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26628..26852)
DNA (225bp) protein (75aa)
id=12555451 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S1-16-all-fractions_k255_6792068_29
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26937..27488)
DNA (552bp) protein (184aa)
thiol-disulfide oxidoreductase (EC:1.8.4.-)
Thioredoxin-like protein n=1 Tax=uncultured bacterium 70 RepID=E3T6K0_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
S1-16-all-fractions_k255_6792068_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(27488..28273)
DNA (786bp) protein (262aa)
membrane protein
Putative transmembrane regulator PrtR id=4753763 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Displaying items 1-30 of 42 in total

View Taxonomy