ggKbase home page

S2-16-all-fractions_k255_5243300

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S2-16-all-fractions_k255_5243300_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

80..2101
DNA (2022bp) protein (674aa)
uvrB; excinuclease ABC subunit B; K03702 excinuclease ABC subunit B id=12555933 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uvrB; excinuclease ABC subunit B
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
S2-16-all-fractions_k255_5243300_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

2105..2878
DNA (774bp) protein (258aa)
transporter, putative ER-chloroplast lipid translocase (ECLT) family; K02066 putative ABC transport system permease protein id=12555934 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein of unknown function DUF140
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
S2-16-all-fractions_k255_5243300_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2884..3741
DNA (858bp) protein (286aa)
ABC transporter, ATPase subunit id=12555935 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polyamine-transporting ATPase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S2-16-all-fractions_k255_5243300_4
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

3806..4846
DNA (1041bp) protein (347aa)
Mce family protein id=12555936 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Mce family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
S2-16-all-fractions_k255_5243300_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4892..5191
DNA (300bp) protein (100aa)
hypothetical protein id=12555937 bin=CNBR_ACIDO species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S2-16-all-fractions_k255_5243300_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5188..5619
DNA (432bp) protein (144aa)
id=12555938 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S2-16-all-fractions_k255_5243300_7
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

5699..6238
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S2-16-all-fractions_k255_5243300_8
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

6506..8329
DNA (1824bp) protein (608aa)
peptidyl-dipeptidase A (EC:3.4.15.1)
Peptidyl-dipeptidase A {ECO:0000313|EMBL:AGY58470.1}; EC=3.4.15.1 {ECO:0000313|EMBL:AGY58470.1};; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
Peptidyl-dipeptidase A n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QLC8_9CYAN
S2-16-all-fractions_k255_5243300_9
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8295..9242)
DNA (948bp) protein (316aa)
xylose isomerase n=1 Tax=Dyadobacter beijingensis RepID=UPI0003732AFC
xylose isomerase
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:ADZ79497.1}; Flags: Precursor;; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
S2-16-all-fractions_k255_5243300_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(9305..9820)
DNA (516bp) protein (172aa)
DNA damage-inducible protein DinB n=1 Tax=Schlesneria paludicola RepID=UPI00029A74B2
DinB family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S2-16-all-fractions_k255_5243300_11
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10168..11883
DNA (1716bp) protein (572aa)
Putative sensor protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UU13_PSEUP
putative sensor protein
Putative sensor protein {ECO:0000313|EMBL:AER57447.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
S2-16-all-fractions_k255_5243300_12
Shewanella decolorationis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11984..12487
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Shewanella decolorationis S12 RepID=V1DH26_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESE40330.1}; TaxID=1353536 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella decolorationis S12.;"
hypothetical protein
S2-16-all-fractions_k255_5243300_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

12520..13428
DNA (909bp) protein (303aa)
oxidoreductase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B63CF3
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EDY19042.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
short-chain dehydrogenase/reductase SDR
Displaying 13 items

View Taxonomy