ggKbase home page

13_1_20cm_full_scaffold_185

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_185_1
unknown

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_20cm_full_scaffold_185_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(89..283)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPD2_9BACT
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L35
13_1_20cm_full_scaffold_185_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(321..776)
DNA (456bp) protein (152aa)
Translation initiation factor IF-3 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A495_GEMAT
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
infC; translation initiation factor IF-3
13_1_20cm_full_scaffold_185_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1068..1931)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A496_GEMAT rbh
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
beta-lactamase domain protein
13_1_20cm_full_scaffold_185_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1931..2638)
DNA (708bp) protein (236aa)
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
dnaQ; DNA polymerase III epsilon subunit (EC:2.7.7.7)
DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A497_GEMAT
13_1_20cm_full_scaffold_185_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2628..3860)
DNA (1233bp) protein (411aa)
arginine deiminase; K01478 arginine deiminase [EC:3.5.3.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00037C55B5
arginine deiminase
13_1_20cm_full_scaffold_185_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3941..4561)
DNA (621bp) protein (207aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A498_GEMAT
redox-sensing transcriptional repressor Rex; K01926 redox-sensing transcriptional repressor Tax=RBG_16_Gemmatimonadetes_66_8_curated
Redox-sensing transcriptional repressor rex
13_1_20cm_full_scaffold_185_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


comp(4573..5385)
DNA (813bp) protein (271aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A499_GEMAT
Ribosomal RNA small subunit methyltransferase A
13_1_20cm_full_scaffold_185_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5382..6947)
DNA (1566bp) protein (522aa)
Putative phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A0_GEMAT
putative phosphatase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein phosphatase 2C domain protein
13_1_20cm_full_scaffold_185_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6923..7381)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D4988B
response regulator receiver protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative anti-sigma factor
13_1_20cm_full_scaffold_185_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7385..7720)
DNA (336bp) protein (112aa)
Anti-sigma factor antagonist n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A2_GEMAT
putative anti sigma factor antagonist Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
anti-anti-sigma factor
13_1_20cm_full_scaffold_185_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7717..8634)
DNA (918bp) protein (306aa)
pta; phosphate acetyltransferase (EC:2.3.1.8); K00625 phosphate acetyltransferase [EC:2.3.1.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A3_GEMAT
13_1_20cm_full_scaffold_185_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8631..9122)
DNA (492bp) protein (164aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A4_GEMAT
13_1_20cm_full_scaffold_185_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9119..9793)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_full_scaffold_185_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9736..11442)
DNA (1707bp) protein (569aa)
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
recJ; single-stranded-DNA-specific exonuclease (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A6_GEMAT
13_1_20cm_full_scaffold_185_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11439..12143)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A7_GEMAT
hypothetical protein; K07164 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF164
13_1_20cm_full_scaffold_185_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12127..13890)
DNA (1764bp) protein (588aa)
dnaG; DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA primase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4A8_GEMAT
DNA primase
13_1_20cm_full_scaffold_185_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13887..16208)
DNA (2322bp) protein (774aa)
Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00092};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas
Endonuclease MutS2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=MUTS2_GEMAT rbh
DNA mismatch repair protein
13_1_20cm_full_scaffold_185_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16205..16615)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B0_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91001.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_full_scaffold_185_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16830..17171)
DNA (342bp) protein (114aa)
HIT family hydrolase n=1 Tax=Thioalkalivibrio sp. AKL11 RepID=UPI00036A9F83
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
HIT family hydrolase
13_1_20cm_full_scaffold_185_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17235..18395)
DNA (1161bp) protein (387aa)
Chaperone protein DnaJ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B5_GEMAT
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ Tax=GWC2_Gemmatimonadetes_71_10_curated
Chaperone protein dnaJ
13_1_20cm_full_scaffold_185_22
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18392..19429)
DNA (1038bp) protein (346aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B6_GEMAT
hrcA; heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gem
13_1_20cm_full_scaffold_185_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(19458..20612)
DNA (1155bp) protein (385aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B7_GEMAT
oxygen-independent coproporphyrinogen III oxidase
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AHG91007.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_full_scaffold_185_24
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20726..21799)
DNA (1074bp) protein (358aa)
DNA protecting protein DprA n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MKF5_RHOM4
DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:ACY48867.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
13_1_20cm_full_scaffold_185_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21763..22758)
DNA (996bp) protein (332aa)
GTPase Obg n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4B9_GEMAT
GTPase obg
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;
13_1_20cm_full_scaffold_185_26
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(22749..23201)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5048
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
hypothetical protein
13_1_20cm_full_scaffold_185_27
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23198..23866)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C0_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Carboxymuconolactone decarboxylase
13_1_20cm_full_scaffold_185_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23871..24131)
DNA (261bp) protein (87aa)
asparaginase (EC:3.5.1.1)
L-asparaginase II (Fragment) n=1 Tax=uncultured bacterium RepID=K2AG56_9BACT
L-asparaginase II {ECO:0000313|EMBL:KGM31103.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP0
13_1_20cm_full_scaffold_185_29
unknown

Not on your lists

24484..24894
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_20cm_full_scaffold_185_30
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24795..25697)
DNA (903bp) protein (301aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4C2_GEMAT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAH38947.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
Displaying 30 items

View Taxonomy