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13_1_20cm_full_scaffold_2840

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_2840_1
unknown

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3..107
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_20cm_full_scaffold_2840_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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104..925
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8W5_GEMAT
hypothetical protein; K07081 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_full_scaffold_2840_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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928..1971
DNA (1044bp) protein (348aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanth
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8W4_GEMAT
menaquinone biosynthesis protein
13_1_20cm_full_scaffold_2840_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1974..2369
DNA (396bp) protein (132aa)
phosphoribosylaminoimidazole carboxylase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Cloacimonetes RepID=B0VG29_CLOAI
5-(carboxyamino)imidazole ribonucleotide mutase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_full_scaffold_2840_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2371..2856
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHG4_RHOMR
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
13_1_20cm_full_scaffold_2840_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2967..3455
DNA (489bp) protein (163aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8W2_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SNARE associated protein
13_1_20cm_full_scaffold_2840_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3483..3926
DNA (444bp) protein (148aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7T9_STAND
isoprenylcysteine carboxyl methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:AHK04950.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Ag
13_1_20cm_full_scaffold_2840_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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3917..4822
DNA (906bp) protein (302aa)
Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8W1_GEMAT
xerD; tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Tyrosine recombinase xerC
13_1_20cm_full_scaffold_2840_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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4831..5103
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AD18_GEMAT
hypothetical protein
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_20cm_full_scaffold_2840_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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5103..6005
DNA (903bp) protein (301aa)
DNA-formamidopyrimidine glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase (EC:3.2.2.23 4.2.99.18)
Putative formamidopyrimidine-DNA glycosylase n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X345_9BACT
13_1_20cm_full_scaffold_2840_11
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6014..6604
DNA (591bp) protein (197aa)
pabA; anthranilate synthase (component II) (EC:4.1.3.27)
anthranilate synthase subunit II n=1 Tax=Azoarcus toluclasticus RepID=UPI0003690627
Anthranilate synthase component II {ECO:0000313|EMBL:GAN80227.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidoc
13_1_20cm_full_scaffold_2840_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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6802..7428
DNA (627bp) protein (209aa)
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=KDSB_GEMAT
3-deoxy-manno-octulosonate cytidylyltransferase
13_1_20cm_full_scaffold_2840_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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7425..9092
DNA (1668bp) protein (556aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
CTP synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V6_GEMAT
CTP synthase
13_1_20cm_full_scaffold_2840_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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9095..9991
DNA (897bp) protein (299aa)
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWC2_Gemmatimonadetes_71_10_curated
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V5_GEMAT
13_1_20cm_full_scaffold_2840_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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9994..10566
DNA (573bp) protein (191aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=GWC2_Gemmatimonadetes_71_1
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V4_GEMAT
13_1_20cm_full_scaffold_2840_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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10535..11509
DNA (975bp) protein (325aa)
kdsD; arabinose 5-phosphate isomerase (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=GWC2_Gemmatimonadetes_71_10_curated
kdsD; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V3_GEMAT rbh
13_1_20cm_full_scaffold_2840_17
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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11614..12126
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V2_GEMAT
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
protein of unknown function DUF1239
13_1_20cm_full_scaffold_2840_18
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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12123..13493
DNA (1371bp) protein (457aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_S04962 Tax=RBG_16_Acidobacteria_68_9_curated
13_1_20cm_full_scaffold_2840_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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13490..14689
DNA (1200bp) protein (400aa)
putative ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative ABC transporter ATP-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8V0_GEMAT
ABC transporter related protein
13_1_20cm_full_scaffold_2840_20
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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14686..15780
DNA (1095bp) protein (365aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
RNA polymerase sigma-54 factor, RpoN
13_1_20cm_full_scaffold_2840_21
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

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15800..16105
DNA (306bp) protein (102aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U9_GEMAT
rpoN; RNA polymerase sigma factor; K03092 RNA polymerase sigma-54 factor Tax=RBG_16_Acidobacteria_68_9_curated
rpoN; RNA polymerase sigma factor
13_1_20cm_full_scaffold_2840_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16102..17097
DNA (996bp) protein (332aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U8_GEMAT
glycosyl transferase family 2
13_1_20cm_full_scaffold_2840_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(17094..18263)
DNA (1170bp) protein (390aa)
group 1 glycosyl transferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
Glycosyl transferase group 1 alias=gwe2_scaffold_243_79 id=1909194 tax=TA06 species=Fibrobacter succinogenes subsp. succinogenes S85 genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres
Glycosyltransferase
13_1_20cm_full_scaffold_2840_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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18322..18936
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TFV7_9MICO
hypothetical protein; K07027 Tax=RBG_16_Gemmatimonadetes_66_8_curated
methyltransferase type 11
13_1_20cm_full_scaffold_2840_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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19089..19847
DNA (759bp) protein (253aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U6_GEMAT
hypothetical membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical membrane protein
13_1_20cm_full_scaffold_2840_26
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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19844..20569
DNA (726bp) protein (242aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8U5_GEMAT
hypothetical membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
Protein of unknown function, membrane YfhO
Displaying 26 items

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