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13_1_20cm_full_scaffold_3278

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_3278_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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34..645
DNA (612bp) protein (204aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sourc
tRNA modification GTPase MnmE n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D719_9BACT
GTPase and tRNA-U34 5-formylation enzyme TrmE
13_1_20cm_full_scaffold_3278_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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710..1381
DNA (672bp) protein (224aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sourc
tRNA modification GTPase MnmE n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D719_9BACT
tRNA modification GTPase TrmE
13_1_20cm_full_scaffold_3278_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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1378..2391
DNA (1014bp) protein (338aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:00
dihydroorotate oxidase (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D718_9BACT
13_1_20cm_full_scaffold_3278_4
Lawsonia intracellularis, Lawsonia, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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2388..3071
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Lawsonia intracellularis RepID=M1GG23_LAWIN
hypothetical protein
NA {ECO:0000313|EMBL:CAJ54140.1}; TaxID=363253 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.;" source="Lawsonia intracellularis (strain PHE
13_1_20cm_full_scaffold_3278_5
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3143..3316
DNA (174bp) protein (58aa)
UPF0391 membrane protein Geob_0344 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=Y344_GEODF
hypothetical protein
UPF0391 membrane protein Geob_0344 {ECO:0000255|HAMAP-Rule:MF_01361}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geob
13_1_20cm_full_scaffold_3278_6
unknown

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comp(3374..3694)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_20cm_full_scaffold_3278_7

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3846..4886
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D103_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49397.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
mrp; Mrp protein, an chromosome partitioning ATPase
13_1_20cm_full_scaffold_3278_8
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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4980..5231
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5ERF2_CORAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE55996.1}; TaxID=583355 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajim
13_1_20cm_full_scaffold_3278_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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5276..5458
DNA (183bp) protein (61aa)
pyrR; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
Bifunctional protein PyrR n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D105_9BACT
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_full_scaffold_3278_10
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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5445..5774
DNA (330bp) protein (110aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=PYRR_ROSCS
Bifunctional protein PyrR {ECO:0000255|HAMAP-Rule:MF_01219}; Includes:; Pyrimidine operon regulatory protein {ECO:0000255|HAMAP-Rule:MF_01219}; Includes:; Uracil phosphoribosyltransferase {ECO:0000255
13_1_20cm_full_scaffold_3278_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

5771..6700
DNA (930bp) protein (310aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=497964 species="Bac
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D106_9BACT
13_1_20cm_full_scaffold_3278_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

6697..7974
DNA (1278bp) protein (426aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=497964 species="B
Dihydroorotase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D108_9BACT rbh
dihydroorotase
13_1_20cm_full_scaffold_3278_13
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(8066..8515)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000371E39E
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
putative signal transduction protein
13_1_20cm_full_scaffold_3278_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(8597..9916)
DNA (1320bp) protein (440aa)
FeS assembly protein SufD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D294_9BACT
FeS assembly protein SufD {ECO:0000313|EMBL:EDY19334.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Fe-S cluster assembly protein SufD
13_1_20cm_full_scaffold_3278_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(9984..10934)
DNA (951bp) protein (317aa)
FeS assembly protein SufB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D293_9BACT
FeS assembly protein SufB {ECO:0000313|EMBL:EDY19333.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Fe-S cluster assembly protein SufB
13_1_20cm_full_scaffold_3278_16
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(10931..11332)
DNA (402bp) protein (134aa)
Fe-S cluster assembly protein SufB n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037AF683
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Fe-S cluster assembly protein SufB
13_1_20cm_full_scaffold_3278_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11343..12110)
DNA (768bp) protein (256aa)
FeS assembly ATPase SufC n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0A5_OPITP
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:ACB77441.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90
Displaying 17 items

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