ggKbase home page

13_1_20cm_full_scaffold_5260

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_5260_1
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1214)
DNA (1212bp) protein (404aa)
aldehyde dehydrogenase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003786FC8 rbh
NAD-dependent aldehyde dehydrogenase Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
NAD-dependent aldehyde dehydrogenase
13_1_20cm_full_scaffold_5260_2
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1306..1788)
DNA (483bp) protein (161aa)
polymerase n=1 Tax=Chryseobacterium taeanense RepID=UPI000379A30E
Polymerase {ECO:0000313|EMBL:KEH07064.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
porin
13_1_20cm_full_scaffold_5260_3
unknown

Not on your lists

comp(1775..1891)
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_20cm_full_scaffold_5260_4
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2077..2526
DNA (450bp) protein (150aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000256|H
3-dehydroquinate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037BDF60
3-dehydroquinate dehydratase
13_1_20cm_full_scaffold_5260_5
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2615..3385
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003715137
4-hydroxyphenylpyruvate dioxygenase
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:AGW94465.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstoni
13_1_20cm_full_scaffold_5260_6
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3617..4339
DNA (723bp) protein (241aa)
nucleoside-diphosphate-sugar epimerase (EC:1.1.1.61) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Ralstonia pickettii OR214 RepID=R0DZ02_RALPI
NAD-dependent epimerase/dehydratase
13_1_20cm_full_scaffold_5260_7
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4526..5332)
DNA (807bp) protein (269aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CN98_SIDLE
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADE12795.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Side
13_1_20cm_full_scaffold_5260_8
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5378..6784)
DNA (1407bp) protein (469aa)
Putative multidrug efflux transporter n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0T8_AZOBR
Multidrug transporter MatE {ECO:0000313|EMBL:KDP84661.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp.
putative multidrug efflux transporter
13_1_20cm_full_scaffold_5260_9
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6935..7282)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360E9F7
Scaffold12, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31365.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
transcriptional regulator, MarR family
13_1_20cm_full_scaffold_5260_10
unknown

Not on your lists

comp(7885..8058)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_20cm_full_scaffold_5260_11
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9143..10291)
DNA (1149bp) protein (383aa)
putative methionine synthase, vitamin-B12 independent (EC:2.1.1.14)
Putative Methionine synthase, vitamin-B12 independent n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYA2_THERP
methionine synthase (B12-independent) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
13_1_20cm_full_scaffold_5260_12
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10284..10952)
DNA (669bp) protein (223aa)
Extra-cytoplasmic solute receptor family protein 76 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T9I3_ALCXX
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
hypothetical protein
13_1_20cm_full_scaffold_5260_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11528..11797)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NR10_9DELT
transposase (IS1294 family protein) Tax=RBG_16_Betaproteobacteria_64_18_curated
putative transposase
13_1_20cm_full_scaffold_5260_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12084..13211)
DNA (1128bp) protein (376aa)
Lipolytic protein G-D-S-L family n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SJM4_9CYAN alias=16ft_combo_ws3_scaffold_198_11 id=5224382 tax=16ft_combo_ws3 species=Pseudanabaena sp. PCC 7367 genus=Pseudanabaena taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria
Uncharacterized protein {ECO:0000313|EMBL:ETX08281.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_20cm_full_scaffold_5260_15
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13438..14415
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B8H6_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36667.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella deni
13_1_20cm_full_scaffold_5260_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14791..16386
DNA (1596bp) protein (532aa)
integral membrane sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_cur
Multi-sensor signal transduction histidine kinase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNH6_ACCPU rbh
histidine kinase
13_1_20cm_full_scaffold_5260_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16371..17750
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNH7_ACCPU rbh
Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RBG_16_Betaproteobacteria_64_18_curated
two component sigma-54 specific Fis family transcriptional regulator
13_1_20cm_full_scaffold_5260_18
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17751..18305
DNA (555bp) protein (185aa)
N-acetyl-anhydromuranmyl-L-alanine amidase n=1 Tax=Thiobacillus thioparus RepID=UPI000370C729
N-acetyl-anhydromuranmyl-L-alanine amidase
N-acetyl-anhydromuranmyl-L-alanine amidase {ECO:0000313|EMBL:BAO30783.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Su
13_1_20cm_full_scaffold_5260_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18561..18743
DNA (183bp) protein (61aa)
nrdA; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1) Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ribonucleoside-diphosphate reductase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZH91_9PROT
ribonucleoside-diphosphate reductase subunit alpha
Displaying 19 items

View Taxonomy