ggKbase home page

13_1_20cm_2_scaffold_1039

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1039_1
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(29..712)
-----------------
DNA (684bp)
protein (228aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D14F6
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Acidobacteria_68_9_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_2_scaffold_1039_2
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

726..1817
-----------------
DNA (1092bp)
protein (364aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B701B3
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_1039_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(1814..4207)
-----------------
DNA (2394bp)
protein (798aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=GWC2_Gemmatimonadetes_71_10_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q0_GEMAT
13_1_20cm_2_scaffold_1039_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

4230..6356
-----------------
DNA (2127bp)
protein (709aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQA5_9FIRM
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein Tax=GWC2_Gemmatimonadetes_71_10_curated
methyl-accepting chemotaxis sensory transducer with Cache sensor
13_1_20cm_2_scaffold_1039_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6353..7981)
-----------------
DNA (1629bp)
protein (543aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
Putative D-3-phosphoglycerate dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2U9_9BACT
D-3-phosphoglycerate dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_2_scaffold_1039_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7978..9090)
-----------------
DNA (1113bp)
protein (371aa)
Transaminase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4S4_GEMAT
transaminase Tax=RBG_16_Gemmatimonadetes_66_8_curated
transaminase
13_1_20cm_2_scaffold_1039_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(9087..9758)
-----------------
DNA (672bp)
protein (224aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Isochorismatase hydrolase alias=AR15_final_v5_1198 id=5800721 tax=GW2011_AR15 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria
hypothetical protein
13_1_20cm_2_scaffold_1039_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9786..10268)
-----------------
DNA (483bp)
protein (161aa)
N-acetyltransferase GCN5; K00619 amino-acid N-acetyltransferase [EC:2.3.1.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative acetyltransferase (EC:2.3.1.-)
Argininosuccinate lyase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=ARLY_ROSCS alias=16ft_combo_ws3_scaffold_896_18 id=5225765 tax=16ft_combo_ws3 species=Roseiflexus castenholzii (strain DSM 13941 / HLO8) genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi
13_1_20cm_2_scaffold_1039_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10265..11443)
-----------------
DNA (1179bp)
protein (393aa)
argD; acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11 2.6.1.17); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] Tax=RBG_16_Gemmatimonade
argD; acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11 2.6.1.17)
Acetylornithine aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4P1_GEMAT
13_1_20cm_2_scaffold_1039_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11440..12171)
-----------------
DNA (732bp)
protein (244aa)
acetylglutamate kinase; K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Acetylglutamate kinase n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=ARGB_CHLAD
acetylglutamate kinase
13_1_20cm_2_scaffold_1039_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12165..13124)
-----------------
DNA (960bp)
protein (320aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_0015
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4N9_GEMAT
13_1_20cm_2_scaffold_1039_12
unknown

Not on your lists

comp(13121..13264)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

13_1_20cm_2_scaffold_1039_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13207..14223)
-----------------
DNA (1017bp)
protein (339aa)
quinolinate phosphoribosyl transferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Quinolinate phosphoribosyl transferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2Y5_CONWI
quinolinate phosphoribosyl transferase
13_1_20cm_2_scaffold_1039_14
unknown

Not on your lists

comp(14224..15081)
-----------------
DNA (858bp)
protein (286aa)

This feature has no annotations

13_1_20cm_2_scaffold_1039_15
unknown

Not on your lists

comp(15059..15409)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

13_1_20cm_2_scaffold_1039_16
BJP_IG2102_ACD39_51_10, ACD39, Bacteria

Not on your lists

comp(15409..16101)
-----------------
DNA (693bp)
protein (231aa)
Glycosyl transferase family 2 n=1 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DL10_DESVM
family 2 glycosyl transferase
Tax=BJP_IG2102_ACD39_51_10
13_1_20cm_2_scaffold_1039_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

16240..17220
-----------------
DNA (981bp)
protein (327aa)
Putative asparaginase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5P9_GEMAT
putative asparaginase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative asparaginase
13_1_20cm_2_scaffold_1039_18
Candidatus Latescibacter anaerobius, Candidatus Latescibacter, Latescibacteria, Bacteria

Not on your lists

17289..18332
-----------------
DNA (1044bp)
protein (348aa)
hypothetical protein, partial n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B49455
13_1_20cm_2_scaffold_1039_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18337..19473)
-----------------
DNA (1137bp)
protein (379aa)
Saccharopine dehydrogenase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5N3_GEMAT
Saccharopine dehydrogenase {ECO:0000313|EMBL:AHG89937.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Saccharopine dehydrogenase
13_1_20cm_2_scaffold_1039_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19540..20115
-----------------
DNA (576bp)
protein (192aa)
HTH-type transcriptional repressor Bm3R1 n=1 Tax=Bhargavaea cecembensis DSE10 RepID=M7NJG3_9BACL
TetR/AcrR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TetR family transcriptional regulator
13_1_20cm_2_scaffold_1039_21
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20167..21381)
-----------------
DNA (1215bp)
protein (405aa)
Serine/threonine protein phosphatase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MIN9_CORCM
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AFE10678.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;
yaeI; serine/threonine protein phosphatase
13_1_20cm_2_scaffold_1039_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21464..22678
-----------------
DNA (1215bp)
protein (405aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F09CA9
Uncharacterized protein {ECO:0000313|EMBL:AIF46686.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
13_1_20cm_2_scaffold_1039_23
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(22675..23361)
-----------------
DNA (687bp)
protein (229aa)
dlhH; carboxymethylenebutenolidase (EC:3.1.1.45) Tax=RBG_16_Aminicenantes_66_30_curated
Twin-arginine translocation pathway signal n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GU5_MESSB
twin-arginine translocation pathway signal
13_1_20cm_2_scaffold_1039_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23351..24433)
-----------------
DNA (1083bp)
protein (361aa)
L-sorbosone dehydrogenase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QKW9_9CYAN
L-sorbosone dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
L-sorbosone dehydrogenase
13_1_20cm_2_scaffold_1039_25
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24417..25508)
-----------------
DNA (1092bp)
protein (364aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit alpha (EC:1.2.4.1)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHD8_CHLTF
13_1_20cm_2_scaffold_1039_26
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25505..26812)
-----------------
DNA (1308bp)
protein (436aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00036151AA
Amidohydrolase family 1 protein {ECO:0000313|EMBL:ELX13623.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Jant
amidohydrolase
13_1_20cm_2_scaffold_1039_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(26809..27912)
-----------------
DNA (1104bp)
protein (368aa)
protein kinase (EC:2.7.11.1)
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GKW5_SORC5
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_2_scaffold_1039_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(27909..29345)
-----------------
DNA (1437bp)
protein (479aa)
Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5L7_GEMAT
putative two-component response regulator; K02488 two-component system, cell cycle response regulator Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
diguanylate cyclase
13_1_20cm_2_scaffold_1039_29
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(29345..30280)
-----------------
DNA (936bp)
protein (312aa)
serine/threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPW5_KORVE
pyridoxal-5'-phosphate-dependent protein subunit beta
13_1_20cm_2_scaffold_1039_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(30282..32792)
-----------------
DNA (2511bp)
protein (837aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
DNA gyrase subunit A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5L6_GEMAT
DNA gyrase subunit A
Displaying items 1-30 of 32 in total

View Taxonomy