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13_1_20cm_2_scaffold_13978

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_13978_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(1..396)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037D1C16
ATP-dependent protease Lon Tax=RBG_16_Euryarchaeota_67_27_curated
ATP-dependent protease Lon
13_1_20cm_2_scaffold_13978_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(510..1052)
DNA (543bp) protein (181aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_20cm_2_scaffold_13978_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1146..1703)
DNA (558bp) protein (186aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_20cm_2_scaffold_13978_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1777..2316)
DNA (540bp) protein (180aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_20cm_2_scaffold_13978_5
unknown

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2581..2700
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_20cm_2_scaffold_13978_6
unknown

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comp(3260..3526)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_20cm_2_scaffold_13978_7

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3612..3884
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003782FB9
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl3p; 50S ribosomal protein L3P
13_1_20cm_2_scaffold_13978_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4117..4857
DNA (741bp) protein (247aa)
50S ribosomal protein L4 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I4_9EURY
rpl4lp; 50S ribosomal protein L4P Tax=RBG_16_Euryarchaeota_68_12_curated
rpl4lp; 50S ribosomal protein L4P
13_1_20cm_2_scaffold_13978_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4845..5141
DNA (297bp) protein (99aa)
50S ribosomal protein L23P n=2 Tax=Euryarchaeota RepID=M9SFF6_9EURY
50S ribosomal protein L23P Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L23P
13_1_20cm_2_scaffold_13978_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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5141..5854
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000381615B
ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RBG_16_Euryarchaeota_68_12_curated
ribosomal protein L2
13_1_20cm_2_scaffold_13978_11
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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5861..6328
DNA (468bp) protein (156aa)
30S ribosomal protein S19P n=2 Tax=Euryarchaeota RepID=M9SJ65_9EURY
SSU ribosomal protein S15e (S19p) Tax=RBG_16_Euryarchaeota_68_13_curated
30S ribosomal protein S19
13_1_20cm_2_scaffold_13978_12

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6336..6791
DNA (456bp) protein (152aa)
50S ribosomal protein L22 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000366A406
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl22p; 50S ribosomal protein L22
13_1_20cm_2_scaffold_13978_13
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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6793..7638
DNA (846bp) protein (282aa)
30S ribosomal protein S3 n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5I7_9EURY
rps3p; 30S ribosomal protein S3P Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rps3p; 30S ribosomal protein S3P
13_1_20cm_2_scaffold_13978_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7639..7890
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000378FEBB
LSU ribosomal protein L29P Tax=RBG_16_Euryarchaeota_68_12_curated
50S ribosomal protein L29P
13_1_20cm_2_scaffold_13978_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7887..8138
DNA (252bp) protein (84aa)
ribonuclease P protein component 1; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=RBG_16_Euryarchaeota_68_12_curated
rpp29; ribonuclease P subunit P29 (EC:3.1.26.5)
Ribonuclease P protein component 1 n=1 Tax=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) RepID=I7LMX7_METBM
13_1_20cm_2_scaffold_13978_16

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8144..8608
DNA (465bp) protein (155aa)
30S ribosomal protein S17 n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036369E0
Archaeal ribosomal protein S17P {ECO:0000313|EMBL:AJS13147.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
archaeal ribosomal protein S17P
13_1_20cm_2_scaffold_13978_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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8605..8949
DNA (345bp) protein (115aa)
50S ribosomal protein L14P n=1 Tax=mine drainage metagenome RepID=T0ZWI7_9ZZZZ
50S ribosomal protein L14P Tax=RBG_16_Euryarchaeota_68_12_curated
rpl14p; 50S ribosomal protein L14P
13_1_20cm_2_scaffold_13978_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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8960..9322
DNA (363bp) protein (121aa)
50S ribosomal protein L24P n=1 Tax=uncultured archaeon RepID=D1JB05_9ARCH
ribosomal protein L24p/L26e, archaeal/eukaryotic
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_20cm_2_scaffold_13978_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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9441..10052
DNA (612bp) protein (204aa)
30S ribosomal protein S4e n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) PF6_ACIS0">RepID=L0HPF6_ACIS0
30S ribosomal protein S4e Tax=RBG_16_Euryarchaeota_68_12_curated
ribosomal protein S4E
13_1_20cm_2_scaffold_13978_20

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10049..10567
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000372A27B
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
LSU ribosomal protein L5P
13_1_20cm_2_scaffold_13978_21

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10720..11109
DNA (390bp) protein (130aa)
30S ribosomal protein S8 n=3 Tax=unclassified Thermoplasmatales RepID=M7T8T6_9EURY
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S15Ae (S8p)
13_1_20cm_2_scaffold_13978_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


11118..11663
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) RepID=RL6_METJA
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RBG_16_Euryarchaeota_68_12_curated
rpl6p; 50S ribosomal protein L6
13_1_20cm_2_scaffold_13978_23

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11665..11919
DNA (255bp) protein (85aa)
Histone H1, orphon n=1 Tax=Chironomus thummi thummi RepID=H1O_CHITH
50S ribosomal protein L24, large subunit ribosomal protein L24 {ECO:0000313|EMBL:AJS13239.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
Displaying 23 items

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