ggKbase home page

13_1_20cm_2_scaffold_1416

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1416_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

132..1004
DNA (873bp) protein (291aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NQY7_GRAMM
succinyl-CoA synthetase, alpha subunit
13_1_20cm_2_scaffold_1416_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1001..1429
DNA (429bp) protein (143aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZF38_9GAMM
13_1_20cm_2_scaffold_1416_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1543..1962
DNA (420bp) protein (140aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_2_scaffold_1416_4
unknown

Not on your lists

2118..2333
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_20cm_2_scaffold_1416_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2371..2583
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B79953
Uncharacterized protein Tax=CSP1_5_NC10
hypothetical protein
13_1_20cm_2_scaffold_1416_6
unknown

Not on your lists

comp(2561..3103)
DNA (543bp) protein (181aa)

This feature has no annotations

13_1_20cm_2_scaffold_1416_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3117..5408)
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B2E2_9BACT
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_20cm_2_scaffold_1416_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5440..6519
DNA (1080bp) protein (360aa)
malate dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272] Tax=CSP1_6_Rokubacteria
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003640E4A
hypothetical protein
13_1_20cm_2_scaffold_1416_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6811..7848
DNA (1038bp) protein (346aa)
Integron integrase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVF8_DESAC alias=16ft_combo_ws3_scaffold_1406_55 id=5223759 tax=16ft_combo_ws3 species=Desulfuromonas acetoxidans DSM 684 genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria
integron integrase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
integron integrase
13_1_20cm_2_scaffold_1416_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7869..8129
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI0003771AD5
Integron gene cassette protein {ECO:0000313|EMBL:AEV61869.1}; TaxID=1114970 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
integron gene cassette protein
13_1_20cm_2_scaffold_1416_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8269..8604
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EM22_9CYAN
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein
13_1_20cm_2_scaffold_1416_12
unknown

Not on your lists

8585..8740
DNA (156bp) protein (52aa)

This feature has no annotations

13_1_20cm_2_scaffold_1416_13
Paenibacillus sp. P1XP2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8785..9243
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003456DB9
Uncharacterized protein {ECO:0000313|EMBL:KHF32999.1}; TaxID=1472719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P1XP2.;"
acetyltransferase
13_1_20cm_2_scaffold_1416_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9372..9671
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13GF9_BURXL
Uncharacterized protein {ECO:0000313|EMBL:ETX04464.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
antibiotic biosynthesis monooxygenase family protein
13_1_20cm_2_scaffold_1416_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9749..10192
DNA (444bp) protein (148aa)
Ring-cleavage extradiol dioxygenase n=1 Tax=Mycobacterium fortuitum subsp. fortuitum DSM 46621 RepID=K0V491_MYCFO
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
13_1_20cm_2_scaffold_1416_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

10235..10837
DNA (603bp) protein (201aa)
CMP/dCMP deaminase, zinc-binding n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW74_ROSS1
CMP/dCMP deaminase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
CMP/dCMP deaminase zinc-binding protein
13_1_20cm_2_scaffold_1416_17
Caldatribacterium californiense, Caldatribacterium, Atribacteria, Bacteria

Not on your lists

comp(10917..11747)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI0003611883 rbh
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=Caldatribacterium californiense
binding-protein-dependent transport systems inner membrane component
13_1_20cm_2_scaffold_1416_18

Not on your lists

comp(11750..12352)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YDT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD41030.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
binding-protein-dependent transport system inner membrane protein
13_1_20cm_2_scaffold_1416_19
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(12630..13934)
DNA (1305bp) protein (435aa)
Extracellular solute-binding protein family 1 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1Q8_VARPS
extracellular solute-binding protein family 1 Tax=RBG_16_NC10_65_8_curated
extracellular solute-binding protein
13_1_20cm_2_scaffold_1416_20
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14138..14758
DNA (621bp) protein (207aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB96195.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
13_1_20cm_2_scaffold_1416_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14828..16255
DNA (1428bp) protein (476aa)
Benzoate-CoA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LE10_9RHOB
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_73_35_curated
Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase
13_1_20cm_2_scaffold_1416_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16255..16959
DNA (705bp) protein (235aa)
ABC transporter related protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWX2_KYRT2
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter-like protein
13_1_20cm_2_scaffold_1416_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16956..17771
DNA (816bp) protein (272aa)
Putative aliphatic sulfonates transport permease protein SsuC n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IIV5_9FIRM rbh
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport systems inner membrane component
13_1_20cm_2_scaffold_1416_24
unknown

Not on your lists

comp(17783..17998)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_20cm_2_scaffold_1416_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18108..19115
DNA (1008bp) protein (336aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS58_9FIRM
ABC transporter, substrate-binding component Tax=CSP1_6_Rokubacteria
NMT1/THI5 like domain protein
13_1_20cm_2_scaffold_1416_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19112..20611
DNA (1500bp) protein (500aa)
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
accC; acetyl CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14)
Acetyl CoA carboxylase, biotin carboxylase subunit n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEU8_9BACT rbh
13_1_20cm_2_scaffold_1416_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20955..21458
DNA (504bp) protein (168aa)
Biotin/lipoic acid binding domain protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEU9_9BACT
biotin/lipoyl attachment protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Biotin/lipoic acid binding domain protein
13_1_20cm_2_scaffold_1416_28
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

21455..22717
DNA (1263bp) protein (421aa)
Selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein; K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Selenocysteine synthase (Seryl-tRNASer selenium transferase)-like protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PU83_STANL
Selenocysteine synthase (seryl-tRNASer selenium transferase)-like protein
13_1_20cm_2_scaffold_1416_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22717..23388
DNA (672bp) protein (224aa)
Amino acid ABC transporter ATP-binding protein, PAAT family n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q1M8_DESAF
Phosphate-transporting ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Phosphate-transporting ATPase
13_1_20cm_2_scaffold_1416_30
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23399..23713
DNA (315bp) protein (105aa)
gltB1; protein GltB1 (EC:1.4.1.13); K10001 glutamate/aspartate transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Extracellular solute-binding protein, family 3 n=2 Tax=Cyanothece RepID=B1WU83_CYAA5
extracellular solute-binding protein
Displaying 30 items

View Taxonomy