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13_1_20cm_2_scaffold_1723

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1723_1

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2..685
DNA (684bp) protein (228aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLT9_TREBD
Uncharacterized protein {ECO:0000313|EMBL:KKO11194.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_20cm_2_scaffold_1723_2

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682..2409
DNA (1728bp) protein (576aa)
Histidinolphosphate transaminase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8H468_ACACA
Uncharacterized protein {ECO:0000313|EMBL:KKO11195.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histidinol-phosphate aminotransferase
13_1_20cm_2_scaffold_1723_3

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2406..3011
DNA (606bp) protein (202aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) RepID=E9C7H8_CAPO3
Uncharacterized protein {ECO:0000313|EMBL:KKO11196.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_20cm_2_scaffold_1723_4
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

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3004..4386
DNA (1383bp) protein (461aa)
Histidinol dehydrogenase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GEH2_ACACA rbh
Histidinol dehydrogenase {ECO:0000313|EMBL:ELR11500.1}; TaxID=1257118 species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba.;" source="Acanthamoeba castell
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
13_1_20cm_2_scaffold_1723_5

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4383..5642
DNA (1260bp) protein (420aa)
Histidinol dehydrogenase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GEH2_ACACA
Uncharacterized protein {ECO:0000313|EMBL:KKO11199.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
phosphoribosyl-ATP diphosphatase
13_1_20cm_2_scaffold_1723_6

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5639..6910
DNA (1272bp) protein (424aa)
Histidinol dehydrogenase n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GEH2_ACACA
Uncharacterized protein {ECO:0000313|EMBL:KKO11200.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histidinol dehydrogenase
13_1_20cm_2_scaffold_1723_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(6912..8066)
DNA (1155bp) protein (385aa)
Phosphomethylpyrimidine synthase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZ35_SORCE
thiC; thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=GWC2_Gemmatimonadetes_71_10_curated
phosphomethylpyrimidine synthase
13_1_20cm_2_scaffold_1723_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(8290..8799)
DNA (510bp) protein (170aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Peptide deformylase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LMG6_HALO1
formylmethionine deformylase
13_1_20cm_2_scaffold_1723_9
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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8901..9554
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWF6_9BACT
uncharacterized MobA-like protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
molybdenum hydroxylase accessory protein, YgfJ family
13_1_20cm_2_scaffold_1723_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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9643..11076
DNA (1434bp) protein (478aa)
Iron-regulated ABC transporter membrane component SufB n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ETI0_9BACT
Fe-S cluster assembly protein SufB Tax=RBG_16_Gemmatimonadetes_66_8_curated
Iron-regulated ABC transporter membrane component SufB
13_1_20cm_2_scaffold_1723_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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11076..11846
DNA (771bp) protein (257aa)
Iron ABC transporter ATP-binding protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G4P9_XANCT
Iron-regulated ABC transporter ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
sufC; FeS assembly ATPase SufC
13_1_20cm_2_scaffold_1723_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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11981..13156
DNA (1176bp) protein (392aa)
FeS assembly protein SufD n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEV6_9BACT
Iron-regulated ABC transporter permease protein SufD Tax=GWC2_Gemmatimonadetes_71_10_curated
FeS assembly protein SufD
13_1_20cm_2_scaffold_1723_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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13153..13629
DNA (477bp) protein (159aa)
nitrogen fixation protein NifU n=1 Tax=Methylomonas sp. MK1 RepID=UPI00037576CD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NifU family SUF system FeS assembly protein
13_1_20cm_2_scaffold_1723_14

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13629..14495
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00037CFF17
Uncharacterized protein {ECO:0000313|EMBL:KKN64221.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cysteine desulfurase
13_1_20cm_2_scaffold_1723_15
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14453..14791
DNA (339bp) protein (113aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1380763 species="Bacteria; Firmic
cysteine desulfurase n=1 Tax=Laceyella sacchari RepID=UPI0003B6517C
cysteine desulfurase, SufS subfamily
13_1_20cm_2_scaffold_1723_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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14844..15806
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDA7F rbh
putative ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
ABC transporter related protein
13_1_20cm_2_scaffold_1723_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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15799..17058
DNA (1260bp) protein (420aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC69_GEMAT
hypothetical membrane protein; K01992 ABC-2 type transport system permease protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical membrane protein
13_1_20cm_2_scaffold_1723_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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17599..19404
DNA (1806bp) protein (602aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_Gemmatimonadetes_66_8_curated
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
13_1_20cm_2_scaffold_1723_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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19524..20384
DNA (861bp) protein (287aa)
ParA family protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7URY8_MYXSD
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cobyrinic acid ac-diamide synthase
13_1_20cm_2_scaffold_1723_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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20381..21265
DNA (885bp) protein (295aa)
Chromosome partitioning protein ParB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=GWC2_Gemmatimonadetes_71_10_curated
parB-like partition protein
13_1_20cm_2_scaffold_1723_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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21262..22089
DNA (828bp) protein (276aa)
Peptidase M23 n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BHS2_THEXL
metalloendopeptidase-like membrane protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
peptidase M23
13_1_20cm_2_scaffold_1723_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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22089..22514
DNA (426bp) protein (142aa)
Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AGF4_FLELS
Integral membrane protein CcmA involved in cell shape determination Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Integral membrane protein CcmA
13_1_20cm_2_scaffold_1723_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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22638..23393
DNA (756bp) protein (252aa)
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVR2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_20cm_2_scaffold_1723_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(23415..24530)
DNA (1116bp) protein (372aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92075.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_2_scaffold_1723_25
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(24543..25148)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA76_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_2_scaffold_1723_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(25145..25627)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEL4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycoside hydrolase family 13 domain protein
13_1_20cm_2_scaffold_1723_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(25620..26177)
DNA (558bp) protein (186aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA74_GEMAT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_2_scaffold_1723_28
unknown

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26296..27174
DNA (879bp) protein (293aa)

This feature has no annotations

13_1_20cm_2_scaffold_1723_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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27286..28206
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8MCN3_9BURK
Zn-dependent hydrolase {ECO:0000313|EMBL:AHG88047.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Zn-dependent hydrolase
13_1_20cm_2_scaffold_1723_30
unknown

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28223..28348
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 30 items

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