ggKbase home page

13_1_20cm_2_scaffold_1889

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1889_1
Desulfurococcus mucosus, Desulfurococcus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(194..667)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) RepID=E8R9L8_DESM0
Uncharacterized protein {ECO:0000313|EMBL:ADV65194.1}; TaxID=765177 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Desulfurococcus.;" source="Desulfurococcus muc
hypothetical protein
13_1_20cm_2_scaffold_1889_2
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(787..1275)
DNA (489bp) protein (163aa)
50S ribosomal protein L30P n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=RL30_IGNH4
50S ribosomal protein L30P {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospit
rpl30p; 50S ribosomal protein L30
13_1_20cm_2_scaffold_1889_3
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists


comp(1276..1908)
DNA (633bp) protein (211aa)
30S ribosomal protein S5 n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T8C7_9ARCH
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RBG_16_Bathyarchaeota_48_13_curated
30S ribosomal protein S5
13_1_20cm_2_scaffold_1889_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(1905..2504)
DNA (600bp) protein (200aa)
50S ribosomal protein L18P n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QQR0_VULDI
rpl18p; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L18
13_1_20cm_2_scaffold_1889_5
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(2508..2936)
DNA (429bp) protein (143aa)
50S ribosomal protein L19e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD7_METFV
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e Tax=RBG_13_Bathyarchaeota_38_9_curated
50S ribosomal protein L19e
13_1_20cm_2_scaffold_1889_6
Thermoproteus uzoniensis, Thermoproteus, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(2933..3424)
DNA (492bp) protein (164aa)
50S ribosomal protein L32e n=1 Tax=Thermoproteus uzoniensis (strain 768-20) RepID=F2L315_THEU7
50S ribosomal protein L32e {ECO:0000256|HAMAP-Rule:MF_00810}; TaxID=999630 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Thermoproteus.;" source="Thermoproteus uzon
50S ribosomal protein L32e
13_1_20cm_2_scaffold_1889_7

Not on your lists


comp(3421..3996)
DNA (576bp) protein (192aa)
50S ribosomal protein L6 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECG1_PYRF1
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6P
13_1_20cm_2_scaffold_1889_8

Not on your lists


comp(4007..4372)
DNA (366bp) protein (122aa)
30S ribosomal protein S8 n=1 Tax=uncultured marine crenarchaeote E37-7F RepID=G9BAP1_9CREN
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P
13_1_20cm_2_scaffold_1889_9
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


comp(4570..5109)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BMD2_HYPBU
rpl5p; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RBG_13_Bathyarchaeota_38_9_curated
rpl5p; 50S ribosomal protein L5P
13_1_20cm_2_scaffold_1889_10
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists


comp(5111..5860)
DNA (750bp) protein (250aa)
30S ribosomal protein S4e n=1 Tax=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) RepID=RS4E_IGNH4
30S ribosomal protein S4e {ECO:0000255|HAMAP-Rule:MF_00485}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="Ignicoccus hospita
30S ribosomal protein S4
13_1_20cm_2_scaffold_1889_11

Not on your lists


comp(5864..6166)
DNA (303bp) protein (101aa)
50S ribosomal protein L24P n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U1Y1_THEAM
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
13_1_20cm_2_scaffold_1889_12
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


comp(6239..6478)
DNA (240bp) protein (80aa)
50S ribosomal protein L14 n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HJQ3_ACIS0
rpl14p; 50S ribosomal protein L14p Tax=RBG_13_Bathyarchaeota_38_9_curated
50S ribosomal protein L14P
13_1_20cm_2_scaffold_1889_13

Not on your lists


comp(6679..7014)
DNA (336bp) protein (112aa)
30S ribosomal protein S17P n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=RS17_UNCMA
30S ribosomal protein S17, small subunit ribosomal protein S17 {ECO:0000313|EMBL:AJS12854.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17P
13_1_20cm_2_scaffold_1889_14
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(7008..7289)
DNA (282bp) protein (94aa)
rnp1; ribonuclease P, component 1 (EC:3.1.26.5); K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=CG_Aenigma_01
rnpA; ribonuclease P protein component 1 (EC:3.1.26.5)
Ribonuclease P protein component 1 n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZV5_METCG
13_1_20cm_2_scaffold_1889_15

Not on your lists


comp(7483..8184)
DNA (702bp) protein (234aa)
Ribosomal protein S3, eukaryotic/archaeal type (Fragment) n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TAB9_9ARCH
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps3p; 30S ribosomal protein S3
13_1_20cm_2_scaffold_1889_16

Not on your lists


comp(8185..8793)
DNA (609bp) protein (203aa)
50S ribosomal protein L22 n=1 Tax=Crenarchaeota archaeon SCGC AAA471-O08 RepID=UPI0003637B09
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl22p; 50S ribosomal protein L22p
13_1_20cm_2_scaffold_1889_17
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

8867..9733
DNA (867bp) protein (289aa)
KaiC domain protein n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH75_PYRYC
KaiC domain protein {ECO:0000313|EMBL:AEH25305.1}; TaxID=529709 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus yayanosii (strain CH1 /
KaiC domain-containing protein
13_1_20cm_2_scaffold_1889_18
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9737..10447
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL48_METZD
Uncharacterized protein {ECO:0000313|EMBL:AEH59922.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhil
hypothetical protein
13_1_20cm_2_scaffold_1889_19
unknown

Not on your lists

10452..10907
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_20cm_2_scaffold_1889_20
unknown

Not on your lists

comp(11744..13564)
DNA (1821bp) protein (607aa)

This feature has no annotations

Displaying 20 items

View Taxonomy