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13_1_20cm_2_scaffold_196

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_196_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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1..465
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UH40_MYXSD
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein
13_1_20cm_2_scaffold_196_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

588..2393
DNA (1806bp) protein (602aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J5_GEMAT
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RBG_16_Gemmatimonadetes_66_8_curated
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG
13_1_20cm_2_scaffold_196_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

2561..3391
DNA (831bp) protein (277aa)
Chromosome (Plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PI99_9DELT rbh
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cobyrinic acid ac-diamide synthase
13_1_20cm_2_scaffold_196_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3388..4284
DNA (897bp) protein (299aa)
Chromosome partitioning protein ParB n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3J2_GEMAT
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=GWC2_Gemmatimonadetes_71_10_curated
parB-like partition protein
13_1_20cm_2_scaffold_196_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4281..5069
DNA (789bp) protein (263aa)
Peptidase M23 n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A5U9_THEAQ
Cell wall endopeptidase, family M23/M37 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metalloendopeptidase-like membrane protein
13_1_20cm_2_scaffold_196_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

5071..5481
DNA (411bp) protein (137aa)
Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KWY1_SOLCM
Integral membrane protein CcmA involved in cell shape determination Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Integral membrane protein CcmA involved in cell shape determination
13_1_20cm_2_scaffold_196_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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5638..6390
DNA (753bp) protein (251aa)
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVR2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
NGG1p interacting factor 3 protein, NIF3
13_1_20cm_2_scaffold_196_8
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6422..7048
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13HJ8_BURXL
Uncharacterized protein {ECO:0000313|EMBL:ABE36441.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenov
hypothetical protein
13_1_20cm_2_scaffold_196_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7099..8373
DNA (1275bp) protein (425aa)
Major facilitator superfamily protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADQ9_GEMAT rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG88025.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
major facilitator superfamily MFS_1
13_1_20cm_2_scaffold_196_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(8337..9530)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6Z1_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG92075.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_2_scaffold_196_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9493..10134)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA76_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:AHG92076.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
13_1_20cm_2_scaffold_196_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10131..10685)
DNA (555bp) protein (185aa)
Putative Glycosyl hydrolase, family 13 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PDN4_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycoside hydrolase family 13 domain protein
13_1_20cm_2_scaffold_196_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10678..11235)
DNA (558bp) protein (186aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA74_GEMAT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AHG92078.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor, sigma-70 family
13_1_20cm_2_scaffold_196_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

11356..12795
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4T8_GEMAT
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:AHG91641.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Ig domain protein group 2 domain protein
13_1_20cm_2_scaffold_196_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12870..13853
DNA (984bp) protein (328aa)
Metallo hydrolase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUV3_9BACT
Zn-dependent hydrolase {ECO:0000313|EMBL:AHG88047.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Zn-dependent hydrolase
13_1_20cm_2_scaffold_196_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

13940..15412
DNA (1473bp) protein (491aa)
Peptidase M20 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ0_KORVE
peptidase M20 Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase M20
13_1_20cm_2_scaffold_196_17
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15409..16308
DNA (900bp) protein (300aa)
Putative phosphoesterase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9R0P0_9DELT
putative phosphohydrolase; K07098 Tax=GWC2_Deltaproteobacteria_55_46b_curated
putative phosphohydrolase
13_1_20cm_2_scaffold_196_18
unknown

Not on your lists

comp(16393..16656)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_20cm_2_scaffold_196_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16653..17633)
DNA (981bp) protein (327aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
atm:ANT_23050 iron-sulfur binding protein alias=RBG9_66_42,RBG9_C00066G00042 id=1247758 tax=RBG9 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi
hypothetical protein
13_1_20cm_2_scaffold_196_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17630..17896)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABN2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_196_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

17957..19138
DNA (1182bp) protein (394aa)
Aminotransferase class V n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B7D5_HERA2
class V aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
class V aminotransferase
13_1_20cm_2_scaffold_196_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

19095..19841
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABM6_GEMAT
hypothetical protein; K06966 Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_20cm_2_scaffold_196_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19846..20985
DNA (1140bp) protein (380aa)
deoxyhypusine synthase-like protein; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Deoxyhypusine synthase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLS6_GLOVI alias=16ft_combo_ws3_scaffold_2801_4 id=5224706 tax=16ft_combo_ws3 species=Gloeobacter violaceus (strain PCC 7421) genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria
deoxyhypusine synthase-like protein
13_1_20cm_2_scaffold_196_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

21176..22480
DNA (1305bp) protein (435aa)
Major facilitator family transporter n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9Y8_9SPHN
major facilitator family transporter Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
major facilitator family transporter
13_1_20cm_2_scaffold_196_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22503..23510
DNA (1008bp) protein (336aa)
D-alanine--D-alanine ligase; K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
D-alanine--D-alanine ligase domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNS5_OPITP
D-alanine--D-alanine ligase
13_1_20cm_2_scaffold_196_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23503..24510
DNA (1008bp) protein (336aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_196_27

Not on your lists

24662..26056
DNA (1395bp) protein (465aa)
PBS lyase HEAT domain protein repeat-containing protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UU23_ROSS1
HEAT repeats {ECO:0000313|EMBL:AIA18716.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HEAT repeat-containing PBS lyase
13_1_20cm_2_scaffold_196_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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26508..27893
DNA (1386bp) protein (462aa)
glycosyl hydrolase family 109 n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B62FF9 rbh
twin-arginine translocation pathway signal Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
oxidoreductase domain protein
13_1_20cm_2_scaffold_196_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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27890..28840
DNA (951bp) protein (317aa)
UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) {ECO:0000313|EMBL:CBE67363.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CBE67363.1};; TaxID=671143 species="Bacteria; candidate division NC10
galE; UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) (EC:5.1.3.2)
UDP-glucose 4-epimerase (UDP-galactose 4-epimerase) (Galactowaldenase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIZ8_9BACT
13_1_20cm_2_scaffold_196_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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28873..29796
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003608ED5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
nucleotidyltransferase
Displaying items 1-30 of 36 in total

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