ggKbase home page

13_1_20cm_2_scaffold_2306

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2306_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..1103)
DNA (1101bp) protein (367aa)
Aminotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I2_GEMAT
aminotransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DegT/DnrJ/EryC1/StrS aminotransferase
13_1_20cm_2_scaffold_2306_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1131..1721)
DNA (591bp) protein (197aa)
Transferase hexapeptide repeat containing protein n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZD3_DICTD
transferase hexapeptide repeat containing protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
transferase hexapeptide repeat containing protein
13_1_20cm_2_scaffold_2306_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1722..2216)
DNA (495bp) protein (165aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Microcystis aeruginosa PCC 9443 RepID=I4G226_MICAE
13_1_20cm_2_scaffold_2306_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2622..5900)
DNA (3279bp) protein (1093aa)
carB; carbamoyl-phosphate synthase large chain (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Carbamoyl-phosphate synthase large chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=CARB_GEMAT
Carbamoyl-phosphate synthase large subunit glutamine-dependent
13_1_20cm_2_scaffold_2306_5
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5884..6849)
DNA (966bp) protein (322aa)
Putative GDP-6-deoxy-D-lyxo-4-hexulose reductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I6_GEMAT
putative GDP-6-deoxy-D-lyxo-4-hexulose reductase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative GDP-6-deoxy-D-lyxo-4-hexulose reductase
13_1_20cm_2_scaffold_2306_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6846..7886)
DNA (1041bp) protein (347aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Gemmatimonadetes_66_8_curated
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I7_GEMAT
13_1_20cm_2_scaffold_2306_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


7907..8098
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=RL28_GEODF
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpmB; 50S ribosomal protein L28
13_1_20cm_2_scaffold_2306_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(8157..8513)
DNA (357bp) protein (119aa)
50S ribosomal protein L17 n=1 Tax=Frankia sp. QA3 RepID=I8QNU2_9ACTO
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L17
13_1_20cm_2_scaffold_2306_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8513..9568)
DNA (1056bp) protein (352aa)
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J0_GEMAT rbh
DNA-directed RNA polymerase subunit alpha
13_1_20cm_2_scaffold_2306_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(9568..10203)
DNA (636bp) protein (212aa)
30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J1_GEMAT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S4
13_1_20cm_2_scaffold_2306_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(10207..10599)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J2_GEMAT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsK; 30S ribosomal protein S11
13_1_20cm_2_scaffold_2306_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(10600..10983)
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RS13_GEMAT
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein S13
13_1_20cm_2_scaffold_2306_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11185..11604)
DNA (420bp) protein (140aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_2306_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11589..12278)
DNA (690bp) protein (230aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23) Tax=RBG_16_Gemmatimonadetes_66_8_curated
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZG60_TERRK
13_1_20cm_2_scaffold_2306_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12271..13128)
DNA (858bp) protein (286aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1)
Dihydroorotate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J6_GEMAT rbh
13_1_20cm_2_scaffold_2306_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13125..14309)
DNA (1185bp) protein (395aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J7_GEMAT
13_1_20cm_2_scaffold_2306_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14306..14683)
DNA (378bp) protein (126aa)
SsrA-binding protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=SSRP_DESAP
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SsrA-binding protein
13_1_20cm_2_scaffold_2306_trna_1
unknown

Not on your lists

14857..14940
DNA (84bp)
transferRNA
13_1_20cm_2_scaffold_2306_18
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(14959..16035)
DNA (1077bp) protein (359aa)
UBA/THIF-type NAD/FAD binding fold n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY17_RUBXD
UBA/THIF-type NAD/FAD binding domain-containing protein; K11996 adenylyltransferase and sulfurtransferase Tax=CG_Arma_02
UBA/THIF-type NAD/FAD binding domain-containing protein
13_1_20cm_2_scaffold_2306_19
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(16316..16636)
DNA (321bp) protein (107aa)
Mov34/MPN/PAD-1 family protein n=2 Tax=Rhodothermus marinus RepID=D0MJA6_RHOM4 alias=16ft_combo_ws3_scaffold_361_58 id=5224912 tax=16ft_combo_ws3 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes
putative metal-dependent protease Tax=RBG_16_KB1_OP1_55_9_curated
putative metal-dependent protease
Displaying 20 items

View Taxonomy