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13_1_20cm_2_scaffold_2593

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2593_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2..613
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U2_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lytic transglycosylase catalytic
13_1_20cm_2_scaffold_2593_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(857..2281)
DNA (1425bp) protein (475aa)
transglycosylase, slt family; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative transglycosylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U3_GEMAT
putative transglycosylase
13_1_20cm_2_scaffold_2593_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2278..2685)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9U4_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_2593_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(2682..2924)
DNA (243bp) protein (81aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_2593_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2996..3859)
DNA (864bp) protein (288aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=GWC2_Gemmatimonadetes_71_10_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L4P6_9BACT
13_1_20cm_2_scaffold_2593_6
unknown

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comp(3867..4280)
DNA (414bp) protein (138aa)

This feature has no annotations

13_1_20cm_2_scaffold_2593_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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4430..4816
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_20cm_2_scaffold_2593_trna_1
unknown

Not on your lists

comp(4843..4915)
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_2593_8
unknown

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5069..5308
DNA (240bp) protein (80aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
13_1_20cm_2_scaffold_2593_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5397..6263
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D2514
methyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
methyltransferase
13_1_20cm_2_scaffold_2593_10
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

6283..7119
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJW3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF84975.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_20cm_2_scaffold_2593_11

Not on your lists

comp(7212..9125)
DNA (1914bp) protein (638aa)
TonB-dependent receptor n=1 Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB93_9BACT
TonB-dependent receptor {ECO:0000313|EMBL:AGH13559.1}; TaxID=1256902 species="Bacteria.;" source="bacterium symbiont of Plakortis simplex pPS11G3.;"
hypothetical protein
13_1_20cm_2_scaffold_2593_12
unknown

Not on your lists

9764..9964
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_20cm_2_scaffold_2593_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

10440..12179
DNA (1740bp) protein (580aa)
DNA polymerase X family/PHP domain-containing protein (EC:2.7.7.7)
DNA polymerase beta family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZH7_9PLAN rbh
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_2_scaffold_2593_14
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(12207..12854)
DNA (648bp) protein (216aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SA
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGJ7_9CHLR
13_1_20cm_2_scaffold_2593_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists


comp(12851..13231)
DNA (381bp) protein (127aa)
50S ribosomal protein L19 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPA9_KYRT2
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
50S ribosomal protein L19
13_1_20cm_2_scaffold_2593_16
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13291..13974)
DNA (684bp) protein (228aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAW8_GEMAT
13_1_20cm_2_scaffold_2593_17
unknown

Not on your lists

comp(13961..14185)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_20cm_2_scaffold_2593_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(14230..14487)
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QIA7_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsP; 30S ribosomal protein S16
13_1_20cm_2_scaffold_2593_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(14495..15844)
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY3_GEMAT
ffh; signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Signal recognition 54 kDa protein
13_1_20cm_2_scaffold_2593_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15891..17141)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY6_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_20cm_2_scaffold_2593_21
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(17138..17434)
DNA (297bp) protein (99aa)
AAA ATPase central domain protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Displaying 22 items

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