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13_1_20cm_2_scaffold_3111

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_3111_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..531
DNA (531bp) protein (177aa)
Outer membrane autotransporter barrel domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTW4_9SPHN
DNA, contig: SP617 {ECO:0000313|EMBL:GAN13399.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
hemagglutinin
13_1_20cm_2_scaffold_3111_2
unknown

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528..938
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_20cm_2_scaffold_3111_3
R_Planctomycetes_38_41, Planctomycetes, Bacteria

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comp(935..1297)
DNA (363bp) protein (121aa)
molybdenum transporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348652B
ModE family transcriptional regulator; K02019 molybdate transport system regulatory protein Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
molybdate transport repressor
13_1_20cm_2_scaffold_3111_4
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1306..2136)
DNA (831bp) protein (277aa)
ABC-type tungstate transport system permease component-like protein n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PS79_KRIFD
ABC-type tungstate transport system permease component-like protein {ECO:0000313|EMBL:ADB31203.1}; Flags: Precursor;; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidace
tungstate ABC transporter permease-like protein
13_1_20cm_2_scaffold_3111_trna_1
unknown

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2261..2333
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_3111_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2384..2983
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A825_GEMAT
Uncharacterized protein {ECO:0000313|EMBL:BAH38385.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
hypothetical protein
13_1_20cm_2_scaffold_3111_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2980..3513
DNA (534bp) protein (178aa)
Putative metal-dependent hydrolase bmyco0002_21980 n=2 Tax=Bacillus mycoides RepID=C3AM11_BACMY
DinB superfamily {ECO:0000313|EMBL:CDM66153.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DinB-like domain protein
13_1_20cm_2_scaffold_3111_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3513..3758
DNA (246bp) protein (82aa)
hypothetical protein n=2 Tax=Xanthomonas RepID=UPI00034942B3
Cysteine-rich CPXCG protein {ECO:0000313|EMBL:AHG91532.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Cysteine-rich CPXCG protein
13_1_20cm_2_scaffold_3111_8
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3884..4273
DNA (390bp) protein (130aa)
Response regulator n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F147_SORC5
Response regulator {ECO:0000313|EMBL:CAN91331.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulo
response regulator
13_1_20cm_2_scaffold_3111_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(4268..4906)
DNA (639bp) protein (213aa)
sodA; Superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
superoxide dismutase n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003614830
superoxide dismutase [Mn] 1
13_1_20cm_2_scaffold_3111_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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5016..5711
DNA (696bp) protein (232aa)
transcription antitermination protein NusG n=1 Tax=SAR324 cluster bacterium SCGC AB-629-O05 RepID=UPI0003822357
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein
13_1_20cm_2_scaffold_3111_11
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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5723..6796
DNA (1074bp) protein (358aa)
ABC transporter related protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5T8_SPHTD
ABC transporter related protein {ECO:0000313|EMBL:ACZ39490.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.
ABC transporter
13_1_20cm_2_scaffold_3111_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6793..8619
DNA (1827bp) protein (609aa)
sugar ABC transporter permease n=1 Tax=Mycobacterium avium RepID=UPI0002F7FB7B
binding-protein-dependent transporters inner membrane component; K02025 multiple sugar transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
binding-protein-dependent transporter inner membrane component
13_1_20cm_2_scaffold_3111_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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8612..9415
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Enterococcus phoeniculicola ATCC BAA-412 RepID=R3WS65_9ENTE
binding-protein-dependent transporters inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
sugar ABC transporter permease
13_1_20cm_2_scaffold_3111_14
unknown

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9537..10133
DNA (597bp) protein (199aa)

This feature has no annotations

13_1_20cm_2_scaffold_3111_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10146..11705
DNA (1560bp) protein (520aa)
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A980_GEMAT
two-component histidine kinase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PAS sensor protein
13_1_20cm_2_scaffold_3111_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

11702..12388
DNA (687bp) protein (229aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A978_GEMAT
OmpR family two-component response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curate
transcriptional regulator domain-containing protein
13_1_20cm_2_scaffold_3111_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

12390..13859
DNA (1470bp) protein (490aa)
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A977_GEMAT rbh
two-component histidine kinase Tax=GWC2_Gemmatimonadetes_71_10_curated
ATP-binding region ATPase domain protein
13_1_20cm_2_scaffold_3111_18
unknown

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13891..14367
DNA (477bp) protein (159aa)

This feature has no annotations

Displaying 19 items

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